DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpIIIC53 and Polr3d

DIOPT Version :9

Sequence 1:NP_649028.3 Gene:RpIIIC53 / 40002 FlyBaseID:FBgn0036775 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001157554.1 Gene:Polr3d / 67065 MGIID:1914315 Length:398 Species:Mus musculus


Alignment Length:446 Identity:111/446 - (24%)
Similarity:178/446 - (39%) Gaps:113/446 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ASGSTTNNGQSGGGARPLETLNG---------MTRLTP-------ARDLTLGGRGAGTASKKVFA 67
            :.|:......:.||.|||  |:|         ...|||       :|||||||     ..||.|.
Mouse     2 SEGNAAGEPSNPGGPRPL--LSGGRGLIGRRPAPPLTPGRLPSIRSRDLTLGG-----VKKKTFT 59

  Fly    68 PNLNAVRNKNANVKTSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGGNSTLIQTQGLFSEGAGD 132
            ||:.:.:.|.   :..::.|..:..|...|      .|.|.|:..|.|...:||:..:|.:|..:
Mouse    60 PNIISRKIKE---EPKEEVTMKKEKRERDR------DRQREGHGRGRGRPEVIQSHSIFEQGPAE 115

  Fly   133 VHVRRSTGNGTA-YARGGEEVSVTRKRVDRKDDKSQAERIKELLGESD----------------- 179
            :..::...:.|. .:..|....:..|:..|:.|: :.::|..:|.:.|                 
Mouse   116 MMKKKGNWDKTVDMSDMGPSHIINIKKEKRETDE-ETKQILRMLEKDDFIDDPGLKNDTRNMPVQ 179

  Fly   180 ---ASGGELSEEEANKTEMALRPILL---KEGLWVTQKTPIAKQE---------------IASST 223
               |..|.|.:||:.:.|  .:|...   :|.:.|.......|:|               .|..|
Mouse   180 LPLAHSGWLFKEESEEPE--AKPFSAGPKEEDMEVDVPAVKVKEEPRDEEEEAKVKAPPRAARKT 242

  Fly   224 STLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLPCVGD- 287
            ..|...::||:.|::|.:                          ..:.::..:||||.||  |. 
Mouse   243 PGLPKDVSVAELLRELSL--------------------------MKDEELLFLQLPDTLP--GQP 279

  Fly   288 DSEDPEPSKGDHQATS------ESEPASPADKCSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQL 346
            .::|.:|.|.:.|...      :.|....|....|   ...|..|.|||:||:|..|||:|:|.|
Mouse   280 PTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAEN---ACTLADLTEGQVGKLLIRKSGKVQLLL 341

  Fly   347 GDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATPDWVHLFQQQ 402
            |....|:.||....|||||:||... :.|:|.|..||.::.||..:||:..|...:
Mouse   342 GKVTLDVTMGTTCSFLQELVSVGLG-DSRTGEMTVLGHVKHKLVCSPDFESLLDHK 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC53NP_649028.3 RNA_pol_Rpc4 272..395 CDD:282926 47/129 (36%)
Polr3dNP_001157554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..149 40/162 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 191..244 10/54 (19%)
RNA_pol_Rpc4 321..387 CDD:310018 31/66 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849697
Domainoid 1 1.000 67 1.000 Domainoid score I9836
eggNOG 1 0.900 - - E1_KOG3122
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 88 1.000 Inparanoid score I5122
Isobase 1 0.950 - 0 Normalized mean entropy S5286
OMA 1 1.010 - - QHG48400
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003960
OrthoInspector 1 1.000 - - oto92695
orthoMCL 1 0.900 - - OOG6_107056
Panther 1 1.100 - - LDO PTHR13408
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1192
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.780

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