Protein Alignment RpIIIC53 and polr3d

DIOPT Version :9

• Sequence 1: NP_649028.3
• Gene: RpIIIC53 / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_001017346.1
• Gene: polr3d / 550100
• XenbaseID: XB-GENE-1014712
• Length: 394
• Species: Xenopus tropicalis
• Alignment Length: 427
• Identity: 118/427 - (27%)
• Similarity: 184/427 - (43%)
• Gaps: 82/427 - (19%)

  Fly    22 STTNNGQSGGG-----ARPLETLNGMTRLTP-------ARDLTLGGRGAGTASKKVFAPNLNAVR 74
            |..|....|||     .|.|......|.|||       :|||||||     ..||.||||:.: |
 Frog     2 SDGNPSNDGGGPRTPMGRGLVGRRSSTPLTPGRLPSIRSRDLTLGG-----VRKKTFAPNIIS-R 60

  Fly    75 NKNANVKTSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGGNSTLIQTQGLFSEGAGDVHVRRST 139
            ......|........|:.|  ||....||.|||       |...:||:..:|.:|..: .:::..
 Frog    61 KIKEEPKEEVSVKVERAER--GRDRRDGAGRGR-------GKPQVIQSHSIFEQGPAE-QLKKKV 115

  Fly   140 G--NGTAYARGGEEVSVTRKRVDRKDDKSQAERIKELLGESDASGGELSEEEANKTEMALRPI-- 200
            |  ..:..|..|....:..||..|:.::...|.::.|  |:|    :..::...:.:....|:
 Frog   116 GWDGPSESADFGPSHIINIKREKRETEEETKEILRML--END----KFLDDPGLRNDSQNHPVQI 174

  Fly   201 -LLKEGLWVTQKTPIAKQEIASSTSTLKDTLAVAQHLQQLHV----------------AAQAASL 248
             |...| |:.::.. .:::|......||:.........|:.|                :|:...:
 Frog   175 PLAHSG-WLFRQVD-EEEDIKPIQGQLKEEKMEVDDTSQVKVKEEPMEDAGAWKPGVPSAKVPIV 237

  Fly   249 EEPPLQYG-RYPRTIGNFLDSSEAQIFLMQLPDVLPCVGD-DSEDPEPSKGDHQAT--------- 302
            ::||:... .:|..:.:...|.|..:|.:||||.||  |. .|.:..|:|.:.|:.
 Frog   238 KKPPVTKDVSFPEMLESLRVSDEECLFFVQLPDTLP--GQPPSLETRPTKTEVQSEDGHMLLVKD 300

  Fly   303 --SESEPASPADKCSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQLGDTRFDLDMGLDPGFLQEL 365
              .:|:.|.  |.|:       ||.:.||.|||:...|||:|:|:||....|:.||....|||||
 Frog   301 KGQDSKAAE--DSCT-------LRDVSEGHIGKLFVRKSGKVQLKLGKVMLDVTMGTSCSFLQEL 356

  Fly   366 MSVTANREQRSGNMINLGPIQAKLKATPDWVHLFQQQ 402
            :||:.. |.|.|.|:.||.||.||..:||:..|.:::
 Frog   357 VSVSVG-ESRGGEMMVLGHIQHKLVCSPDFESLLEKR 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpIIIC53	NP_649028.3	RNA_pol_Rpc4	272..395	CDD:282926	51/134 (38%)
polr3d	NP_001017346.1	RNA_pol_Rpc4	260..385	CDD:398686	52/136 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	72	1.000	Domainoid score	I9194
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	102	1.000	Inparanoid score	I4838
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1381418at2759
OrthoFinder	1	1.000	-	-		FOG0003960
OrthoInspector	1	1.000	-	-		oto102982
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1192
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	6.090