Protein Alignment RpIIIC53 and F26E4.4

DIOPT Version :9

• Sequence 1: NP_649028.3
• Gene: RpIIIC53 / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_492595.1
• Gene: F26E4.4 / 259393
• WormBaseID: WBGene00009159
• Length: 408
• Species: Caenorhabditis elegans
• Alignment Length: 398
• Identity: 98/398 - (24%)
• Similarity: 153/398 - (38%)
• Gaps: 103/398 - (25%)

  Fly    68 PNLNAVRNKNANVKTSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGG---NSTLIQTQGLFSEG 129
            |||:....:.|..:        :...|||..:..||.||||....|.|   ...||||.|:||||
 Worm     7 PNLSLAGKREAPAQ--------QKNNRGGSTSTRGAGRGRGARGRGAGPRPKQELIQTGGVFSEG 63

  Fly   130 -AGDVHVR---------------RSTGNGTAYARGGEEVSVTRKRVDRKDDKSQAERIKELLGES 178
             .||...|               |..|:|...:..|:     ..:..:|::|:.|       |::
 Worm    64 LGGDFPSRKKDKDSDASQFSYSNREKGSGAPSSSTGD-----HNKEGKKEEKNVA-------GKA 116

  Fly   179 DASGGE---LSEEEANKTEM-ALRPILLKEGLWVTQKTPIAKQEIASSTSTLKDTLAVAQHLQQL 239
            ...|.:   .|::|.:|.|: ||.|......|......|:              .|......|.|
 Worm   117 SFEGWDALWCSDDEGDKEELKALMPPPFISDLRRGNIMPV--------------VLPSEDQPQFL 167

  Fly   240 HVAAQAA--SLEEP---------------PLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLPCVGD 287
            ::..::|  ||||.               |......|..:.|.|::|.:.:..:|||.|:..:.:
 Worm   168 NIINKSARLSLEEDEAPIDEKKPLNTESGPKSRKATPEQLINMLEASSSDLLHLQLPSVIGSICN 232

  Fly   288 DSEDPEPSKGDHQATSE-SEPAS--PADKCSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQLGDT 349
            :.|      .:.:|:.| .||.:  |....|..|..|.|.|  ..:|||:...:.||:.|::|..
 Worm   233 NIE------ANVEASMEVDEPDNDVPTGIVSAPPPPSGLPQ--NRKIGKLQVTRKGRMILKIGGH 289

  Fly   350 RFDLDMGLDPGFLQ--ELMSVTANREQ--------RSGNMIN----LGPIQAKLKATPDWVHLFQ 400
            ..|:......|..|  .|:.|..|.:|        .:..|||    ||.::..|..:..|..|.:
 Worm   290 SIDITSKPTTGKKQGTVLLEVDPNADQLQAPSTFSSAPEMINSLYHLGNVKHNLVGSMTWGALNE 354

  Fly   401 QQDAASKR 408
            :    |||
 Worm   355 K----SKR 358

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpIIIC53	NP_649028.3	RNA_pol_Rpc4	272..395	CDD:282926	35/139 (25%)
F26E4.4	NP_492595.1	RNA_pol_Rpc4	<232..>294	CDD:282926	19/69 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR13408
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100