Protein Alignment Polr3D and rpc53

DIOPT Version :10

• Sequence 1: NP_649028.3
• Gene: Polr3D / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_588386.1
• Gene: rpc53 / 2538851
• PomBaseID: SPCC18.07
• Length: 330
• Species: Schizosaccharomyces pombe
• Alignment Length: 318
• Identity: 73/318 - (22%)
• Similarity: 120/318 - (37%)
• Gaps: 78/318 - (24%)

  Fly   120 IQTQGLFSEGAGDVHVRRSTGNGTAYARGGEEVSVTRKRVDRKDDKSQAERIKELLGESDASGG- 183
            :...|.|:.|.      .::.:||....|...|.....:.:.|||     .:.:|...|....|
pombe    49 LTASGPFALGP------NASSSGTGRPIGSVYVPPPNVKNEEKDD-----ALSKLAASSGHDEGH 102

  Fly   184 -----------ELSEEEANKTEMA----LRPIL------------LKEGLWVTQKTPIAKQEIAS 221
                       ||:.:|..||::.    |.||:            ||........|.:..:|...
pombe   103 DEDMVDILKLRELNGQEQGKTDIGGKDLLVPIITDRMLPESNDEKLKHHAESAIHTTVINKEDEE 167

  Fly   222 STSTLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLP-CV 285
            ......|..::||||.    ..:...:|:             :|.|    |:.|||.||.|| .:
pombe   168 QERVALDLQSLAQHLG----LTEQEGMED-------------HFKD----QMVLMQFPDKLPRFM 211

  Fly   286 GDDSEDPE-PSK--GDHQATSESEPASPADKCSNGPKGSVLRQLEE----------GQIGKILRY 337
            ||...||. ||.  .:.:|..:::.....|...:|.:...:..|..          ||||.:..:
pombe   212 GDADVDPVWPSSEVKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVH 276

  Fly   338 KSGRVKLQLGDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATPDW 395
            :||:..|::|...|.:..|.|..||||:..|    :..|..:.|||..:.::..:||:
pombe   277 QSGKTTLEMGGVNFVVQSGSDCLFLQEIAVV----DYDSKRIWNLGSFERRMIVSPDF 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3D	NP_649028.3	RNA_pol_Rpc4	270..395	CDD:461558	39/138 (28%)
rpc53	NP_588386.1	RNA_pol_Rpc4	195..330	CDD:461558	40/142 (28%)