Protein Alignment RpIIIC53 and rpc53

DIOPT Version :9

• Sequence 1: NP_649028.3
• Gene: RpIIIC53 / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_588386.1
• Gene: rpc53 / 2538851
• PomBaseID: SPCC18.07
• Length: 330
• Species: Schizosaccharomyces pombe
• Alignment Length: 318
• Identity: 73/318 - (22%)
• Similarity: 120/318 - (37%)
• Gaps: 78/318 - (24%)

  Fly   120 IQTQGLFSEGAGDVHVRRSTGNGTAYARGGEEVSVTRKRVDRKDDKSQAERIKELLGESDASGG- 183
            :...|.|:.|.      .::.:||....|...|.....:.:.|||     .:.:|...|....|
pombe    49 LTASGPFALGP------NASSSGTGRPIGSVYVPPPNVKNEEKDD-----ALSKLAASSGHDEGH 102

  Fly   184 -----------ELSEEEANKTEMA----LRPIL------------LKEGLWVTQKTPIAKQEIAS 221
                       ||:.:|..||::.    |.||:            ||........|.:..:|...
pombe   103 DEDMVDILKLRELNGQEQGKTDIGGKDLLVPIITDRMLPESNDEKLKHHAESAIHTTVINKEDEE 167

  Fly   222 STSTLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLP-CV 285
            ......|..::||||.    ..:...:|:             :|.|    |:.|||.||.|| .:
pombe   168 QERVALDLQSLAQHLG----LTEQEGMED-------------HFKD----QMVLMQFPDKLPRFM 211

  Fly   286 GDDSEDPE-PSK--GDHQATSESEPASPADKCSNGPKGSVLRQLEE----------GQIGKILRY 337
            ||...||. ||.  .:.:|..:::.....|...:|.:...:..|..          ||||.:..:
pombe   212 GDADVDPVWPSSEVKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVH 276

  Fly   338 KSGRVKLQLGDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATPDW 395
            :||:..|::|...|.:..|.|..||||:..|    :..|..:.|||..:.::..:||:
pombe   277 QSGKTTLEMGGVNFVVQSGSDCLFLQEIAVV----DYDSKRIWNLGSFERRMIVSPDF 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpIIIC53	NP_649028.3	RNA_pol_Rpc4	272..395	CDD:282926	39/136 (29%)
rpc53	NP_588386.1	RNA_pol_Rpc4	196..330	CDD:282926	40/141 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	47	1.000	Domainoid score	I3513
eggNOG	1	0.900	-	-		E1_KOG3122
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0003960
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR13408
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1192
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.940