DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpS26 and gnrh2

DIOPT Version :9

Sequence 1:NP_524134.1 Gene:mRpS26 / 40001 FlyBaseID:FBgn0036774 Length:225 Species:Drosophila melanogaster
Sequence 2:NP_852104.3 Gene:gnrh2 / 353222 ZFINID:ZDB-GENE-030516-1 Length:86 Species:Danio rerio


Alignment Length:56 Identity:14/56 - (25%)
Similarity:21/56 - (37%) Gaps:9/56 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 WLPVAKSKM-----FRVPERKKQSEEERTELMRL--HNQYKTQLRS--VRQFLREE 83
            |.|..|.::     ..|.|..|..|..:...:|.  .|..||.|..  :|.|.:.:
Zfish    31 WYPGGKREIDLYDTSEVSEEVKLCEAGKCSYLRPQGRNILKTILLDALIRDFQKRK 86

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpS26NP_524134.1 MRP-S26 34..201 CDD:291604 14/56 (25%)
gnrh2NP_852104.3 GnRH 25..34 CDD:278853 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4691
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.