Sequence 1: | NP_733821.1 | Gene: | LMNA / 4000 | HGNCID: | 6636 | Length: | 664 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
Alignment Length: | 624 | Identity: | 219/624 - (35%) |
---|---|---|---|
Similarity: | 335/624 - (53%) | Gaps: | 78/624 - (12%) |
- Green bases have known domain annotations that are detailed below.
Human 1 METPSQRRATRS---GAQASS-----TPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENA 57
Human 58 GLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTK 122
Human 123 KEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEM 187
Human 188 LRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQH 252
Human 253 EDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKE 317
Human 318 AKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 382
Human 383 EEERL-------------------RLSPSPTSQRSRGRASSHSSQTQG--GGSVTKKRK--LEST 424
Human 425 ESR--SSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKF 487
Human 488 TLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVED 552
Human 553 DEDEDGDDLLHHHHGSHCSSSGDPAEYNLRSRTVLCGTC 591 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LMNA | NP_733821.1 | Interaction with MLIP. /evidence=ECO:0000269|PubMed:21498514 | 1..130 | 62/136 (46%) | |
Head | 1..33 | 15/39 (38%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..25 | 10/31 (32%) | |||
Filament | 30..386 | CDD:365827 | 142/355 (40%) | ||
Coil 1A | 34..70 | 18/35 (51%) | |||
Linker 1 | 71..80 | 4/8 (50%) | |||
Coil 1B | 81..218 | 46/136 (34%) | |||
Linker 2 | 219..242 | 6/22 (27%) | |||
Coil 2 | 243..383 | 56/139 (40%) | |||
Necessary and sufficient for the interaction with IFFO1. /evidence=ECO:0000269|PubMed:31548606 | 259..331 | 22/71 (31%) | |||
Tail | 384..664 | 65/233 (28%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 384..442 | 21/82 (26%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 417..422 | 2/6 (33%) | |||
LTD | 434..541 | CDD:395746 | 38/106 (36%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 552..576 | 0/23 (0%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 598..619 | ||||
LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 142/355 (40%) |
ATP-synt_B | <67..>142 | CDD:304375 | 32/74 (43%) | ||
MreC | <178..>224 | CDD:302802 | 18/45 (40%) | ||
LTD | 473..574 | CDD:279300 | 38/110 (35%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 270 | 1.000 | Domainoid score | I1835 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 398 | 1.000 | Inparanoid score | I1952 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG48052 | |
OrthoDB | 1 | 1.010 | - | - | D204815at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8670 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103212 | |
Panther | 1 | 1.100 | - | - | O | PTHR45721 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X632 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.840 |