Protein Alignment Eip75B and Rara

DIOPT Version :9

• Sequence 1: NP_001246821.1
• Gene: Eip75B / 39999
• FlyBaseID: FBgn0000568
• Length: 1412
• Species: Drosophila melanogaster
• Sequence 2: XP_017452499.1
• Gene: Rara / 24705
• RGDID: 3534
• Length: 462
• Species: Rattus norvegicus
• Alignment Length: 541
• Identity: 153/541 - (28%)
• Similarity: 237/541 - (43%)
• Gaps: 110/541 - (20%)

  Fly   352 VSSSSSSSAIGSGGSSSSH------IFRTPVVSSSSS----SNMHHQ-----------QQQQQQQ 395
            ::|:|||.....||..:.:      .|..|::...|.    :::.||           ...:.|.
  Rat     1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSLQHQLPVSGYSTPSPATIETQS 65

  Fly   396 SSLGNSVMRPPPPPPPPKVKHASSSSSGNSSSSNTNNSSSSSNGEEPSSSIPDLEFDGTTVLCRV 460
            ||....|..||.|||.|::                         .:|               |.|
  Rat    66 SSSEEIVPSPPSPPPLPRI-------------------------YKP---------------CFV 90

  Fly   461 CGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMS 525
            |.||:||:||||.:|||||||||||||:.:.| .|.:::.|.|.::.|||||||||:||..||||
  Rat    91 CQDKSSGYHYGVSACEGCKGFFRRSIQKNMVY-TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMS 154

  Fly   526 RDAVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLET----CEFTKE 586
            :::||..|..|:::.......:..|        |..|:.:   |:..|.:||.||    |:..|.
  Rat   155 KESVRNDRNKKKKETPKPECSESYT--------LTPEVGE---LIEKVRKAHQETFPALCQLGKY 208

  Fly   587 KV-SAMRQRARDCPSYSMPTLLACPLNPAPELQSEQEFSQRFAHVIRGVIDFAGMIPGFQLLTQD 650
            .. ::..||.                  :.::....:||:.....|...::||..:|||..||..
  Rat   209 TTNNSSEQRV------------------SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIA 255

  Fly   651 DKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARF--LVDSTFNFAERMN 713
            |:.|||||...|.|.:|:...:....:::...:|..:.|..:.   ||.|  |.|..|.||.::.
  Rat   256 DQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH---NAGFGPLTDLVFAFANQLL 317

  Fly   714 SMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMP 778
            .:.:.|||.||..||.||..||..|...:.::.:...|...|:..|.:.||.:|....|:|..:.
  Rat   318 PLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKIT 382

  Fly   779 DLRTLSTLHTEKLVVFRTE---HKELLRQQMWSMEDGNNSDGQQNKSPSGSWADAMDVEAAKSPL 840
            |||::|....|:::..:.|   ....|.|:|  :|:....|....:|..|:    .|......|.
  Rat   383 DLRSISAKGAERVITLKMEIPGSMPPLIQEM--LENSEGLDTLSGQSGGGT----RDGGGLAPPP 441

  Fly   841 GSVSSTESADLDYGSPSSSQP 861
            ||.|.:.|......||::..|
  Rat   442 GSCSPSLSPSSHRSSPATQSP 462

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Eip75B	NP_001246821.1	NR_DBD_REV_ERB	453..541	CDD:143540	47/87 (54%)
		NR_LBD_REV_ERB	609..796	CDD:132738	54/188 (29%)
Rara	XP_017452499.1	NR_DBD_RAR	82..166	CDD:143522	48/124 (39%)
		NR_LBD_RAR	186..416	CDD:132735	68/255 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24082
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.010