DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eip75B and Rara

DIOPT Version :10

Sequence 1:NP_730321.1 Gene:Eip75B / 39999 FlyBaseID:FBgn0000568 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_033050.2 Gene:Rara / 19401 MGIID:97856 Length:462 Species:Mus musculus


Alignment Length:524 Identity:88/524 - (16%)
Similarity:147/524 - (28%) Gaps:202/524 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   558 SSKSKDETFQEGCESNSGWQFNLSNDKFYMNGKSSQQLQANTNKSSVHSLRVFHSVPAIKLQTMK 622
            ||:||.....:|.        .:..|:....|:....:..|.....|.:.|||.:          
Mouse   100 SSRSKVYVAVDGT--------TVLEDEIREQGRGIHVIVLNQATGHVMAKRVFDT---------- 146

  Fly   623 SKLSNKDIANFHRPKALWYPHDNE----------------LAIKQQGKLPTRGSMKIIVKSLGGK 671
                             :.||::|                ..||.:|....:.:.|.::|.||  
Mouse   147 -----------------YSPHEDEAMILFLNMVTRGRILIFTIKDEGTFHLKDAAKNLLKGLG-- 192

  Fly   672 GSKLHVGIEESVSSLRAKASRKLDFKE--TEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTK 734
                            ::.:..|.:::  |..||   ||.::..||...:..:.......|::|:
Mouse   193 ----------------SQVAVTLGWRDMWTLVVK---KGGQVYGEKHSKSPALSTWGDPVLLKTE 238

  Fly   735 VHLWP-------WAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANL 792
            |.|..       ||.                              .|....|.|..|......::
Mouse   239 VQLTASEEAECHWAD------------------------------TELNRRRKLFCSKVEGYGSI 273

  Fly   793 CTYYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAGCSQSSVETNMYKAPIFPQRL 857
            |: .:..:|       :....|.|.|                          .|:|..|:.....
Mouse   274 CS-CKDPAP-------IEFNPDPLSN--------------------------NNVYNIPVAVIAG 304

  Fly   858 QSTDYLLVRSPKGKLSLRRID----KIVVVGQQEPRMEVMS----PGSKNLQTYLVNRMLVYVYR 914
            ...:| |.|..:..||...::    .:.:.|..|..|:|:.    .|.::....:.|..:...|:
Mouse   305 NRPNY-LYRMLRSLLSSHGVNPQMITVFIDGYYEEPMDVVDLFGLKGVQHTPISIKNARVSQHYK 368

  Fly   915 EFFKRGGGEHP-------------IAADELSFLFSNLTDAIIKKNMKIIACWKRDKNGQSY---- 962
            .........||             |:.|..|||...:.......::..|:.|    |.|.|    
Mouse   369 ASLTATFNLHPDADFAIVLEEDLDISIDFFSFLGQTIHLLHEDDSLYCISAW----NDQGYEHTA 429

  Fly   963 ----------------WTKKDSL----LEPPESELKKL-------VAPEHVCSYESMLAGLYRLK 1000
                            |..|.||    |||.....:||       ..||.....|.::..:.|..
Mouse   430 EDPSLLYRVESMPGLGWVLKKSLYKDELEPKWPTPEKLWDWDMWMRMPEQRKGRECVIPDVSRSY 494

  Fly  1001 HLGI 1004
            |.||
Mouse   495 HFGI 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip75BNP_730321.1 NR_DBD_REV_ERB 453..541 CDD:143540
NR_LBD_REV_ERB 609..796 CDD:132738 31/211 (15%)
RaraNP_033050.2 Modulating 1..87
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..77
NR_DBD_RAR 82..166 CDD:143522 15/100 (15%)
Hinge 154..182 3/27 (11%)
NR_LBD_RAR 186..416 CDD:132735 48/315 (15%)
UBR5-degron. /evidence=ECO:0000250|UniProtKB:P10276 254..258 1/3 (33%)
Required for binding corepressor NCOR1 404..419 1/14 (7%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P10276 408..416 0/7 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..462 11/45 (24%)
Blue background indicates that the domain is not in the aligned region.

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