DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eip75B and nhr-6

DIOPT Version :9

Sequence 1:NP_001246821.1 Gene:Eip75B / 39999 FlyBaseID:FBgn0000568 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_497731.1 Gene:nhr-6 / 175462 WormBaseID:WBGene00003605 Length:619 Species:Caenorhabditis elegans


Alignment Length:574 Identity:126/574 - (21%)
Similarity:212/574 - (36%) Gaps:164/574 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 SSSSHIFRTPVVSSSSSSNMHHQQQQQQQ-------------------QSSLGNSVMRPPPPP-- 409
            |||||  |.|...::|.:::..:.....|                   ..:|.|..|..|..|  
 Worm   127 SSSSH--RLPSEMNASITHIKSELDPTMQAFQMPHNDLFLATAAPHYNPFALSNDFMPNPLMPSF 189

  Fly   410 -PPPKVKHASSSSSGNSSSSNTNNSSSSSNGEEP-SSSIPD------------LEFDGTTV---- 456
             .|...:|...|.|...|...|::|:::.....| |||:|.            |..|..:.    
 Worm   190 TSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSF 254

  Fly   457 ------------LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRN 509
                        :|.||.|:|...|||..:||||||||:|::|:..:| .|..|:.|.|.:..|:
 Worm   255 GVPSETALDADKMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKY-TCAGNKTCPIDKRYRS 318

  Fly   510 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVL 574
            ||||||.:||:.|||.::.||.|.:..|               ||:       |..:.:|     
 Worm   319 RCQYCRYQKCLEVGMVKEIVRHGSLSGR---------------RGR-------LSSKTKL----- 356

  Fly   575 RAHLETCEFTKEKVSAMRQRARDCPSYSMP--TLLACPLNPAPELQSEQEFSQRF-----AHVIR 632
                              .|:.|.||..:|  .|:...:.....:...::|.|.|     ..::.
 Worm   357 ------------------ARSEDQPSPPLPLLALMGKAIEDHTNMTVVRQFMQPFDETIALRILH 403

  Fly   633 GVIDFAGMI----PGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQ 693
            |.:.....:    |....:...|...||....|..:.:|:.....:|.::|:..:|::...:|..
 Worm   404 GELHATKKLLMAMPQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIMFESGELFSLNAFP 468

  Fly   694 NGAN--ARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLI-------TPDRPGLRNLELIEKMYS 749
            ....  .||:||....|:      :|.|.|...|.|.:.:       ..:..||.|..|::::.|
 Worm   469 ACFQQIIRFMVDKARTFS------SLVDWEPQAFAAFIALQFLAGNTEHNVLGLTNKPLVDQVQS 527

  Fly   750 RLKGCLQ--YIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFRTEHKELLRQQMWSMEDG 812
            .:...|:  ...:||:      |||::....:......|..:.|.:....|:  |.::...:   
 Worm   528 TIINALKDHCSGSQNK------LAKIVRLTQEFDVFHALGLQALDILYPSHQ--LPEEFMFL--- 581

  Fly   813 NNSDGQQNKSPSGSWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSL 866
                                :...::||.|..:..:.    |||.:  |.|.||
 Worm   582 --------------------INLTRAPLRSTDAPPAC----GSPVA--PSGSSL 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip75BNP_001246821.1 NR_DBD_REV_ERB 453..541 CDD:143540 39/103 (38%)
NR_LBD_REV_ERB 609..796 CDD:132738 37/206 (18%)
nhr-6NP_497731.1 Pax2_C 165..261 CDD:289189 19/95 (20%)
NR_DBD_NGFI-B 266..340 CDD:143527 36/74 (49%)
HOLI 405..560 CDD:214658 31/166 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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