DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eip75B and nhr-23

DIOPT Version :9

Sequence 1:NP_001246821.1 Gene:Eip75B / 39999 FlyBaseID:FBgn0000568 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_001020975.1 Gene:nhr-23 / 172460 WormBaseID:WBGene00003622 Length:588 Species:Caenorhabditis elegans


Alignment Length:601 Identity:137/601 - (22%)
Similarity:236/601 - (39%) Gaps:152/601 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 VSTSTRHV-NVIASNHF----QQQQQQH----QAQQHQQQHQQHQQHQQHVI---ASVSSSSSSS 359
            |:...||: :|:..:.|    :.:||.|    ||.:.:........|.:..:   .|:.:..|..
 Worm     5 VTGPNRHLTSVLEMSSFVYWPRSRQQAHNFPMQAVEQKLADATRTLHAKSSLQPSLSIETPKSKE 69

  Fly   360 AIGSGGSSSSHIFRTPVVSSSSSSNMHHQQQQQQQQSSLGNSVMRPPPPPPPPKVKHASSSSSGN 424
            ...||..||:.:|....:.|..:.....:.:.......:|...::                 .||
 Worm    70 NDESGCESSNCMFHPHTIKSEPNFCFAREFKSVPDDFRIGGGDLQ-----------------MGN 117

  Fly   425 SSSSNTNNSSSSSNGEEPSSSIPD-LEFDG-------------TTVLCRVCGDKASGFHYGVHSC 475
            :|...|  ....:|..:.:..:|| :.|.|             ..:.|:|||||:||.||||.:|
 Worm   118 NSKRLT--CVIDTNRVDMAGILPDNMSFRGLPENKSLLVSAQIEVIPCKVCGDKSSGVHYGVITC 180

  Fly   476 EGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKA 540
            ||||||||||....:.|: |.:.:.|.:.|:||||||||||||||.:|||||||:|||:.|:::.
 Worm   181 EGCKGFFRRSQSSIVNYQ-CPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGRMSKKQRE 244

  Fly   541 RI---------LAA--------------------------------MQQSTQNRGQQRAL-ATEL 563
            ::         |||                                ...||...|...|: ||..
 Worm   245 KVEDEVRMHKELAANGLGYQAIYGDYSPPPSHPSYCFDQSMYGHYPSGTSTPVNGYSIAVAATPT 309

  Fly   564 DDQPRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYSMPTLL----------------ACPLN 612
            ...|:.:.....:.....::...:.:.....:...|...:.|.:                .|.::
 Worm   310 TPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVIRAFNQQHSSYTTQHGVCNVD 374

  Fly   613 P--APELQSE---QEFSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFD---------- 662
            |  .|.|...   :.|::....:|:.:|:||..|.||..|.|:.:..|||..:|:          
 Worm   375 PDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNLPQETQIQLLKGSVFELSLVFAAMYY 439

  Fly   663 -------------ALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLVDSTFNFAERMNS 714
                         ..|..||...|:.:..|:.:|..:.....:|...:...|:.:.. ..|:::|
 Worm   440 NVDAQAVCGERYSVPFACLIAEDDAEMQLIVEVNNTLQEIVHLQPHQSELALLAAGL-ILEQVSS 503

  Fly   715 MNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPD 779
            .:    .||:.....:.|.:.  |:| .|.:.:..|: ||::           :.:.::.:....
 Worm   504 SH----GIGILDTATIATAET--LKN-ALYQSVMPRI-GCME-----------DTIHRIQDVETR 549

  Fly   780 LRTLSTLHTEKLVVFR 795
            :|..:.||.|.|..||
 Worm   550 IRQTARLHQEALQNFR 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Eip75BNP_001246821.1 NR_DBD_REV_ERB 453..541 CDD:143540 53/100 (53%)
NR_LBD_REV_ERB 609..796 CDD:132738 44/215 (20%)
nhr-23NP_001020975.1 NR_DBD_ROR 156..250 CDD:143526 52/94 (55%)
NR_LBD 384..580 CDD:299703 40/202 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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