DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp74F and tspan12

DIOPT Version :10

Sequence 1:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_957446.1 Gene:tspan12 / 394127 ZFINID:ZDB-GENE-040426-1285 Length:301 Species:Danio rerio


Alignment Length:233 Identity:61/233 - (26%)
Similarity:106/233 - (45%) Gaps:24/233 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LFIANFVIFVGGAIVFCLTLWTLVDRSFVNELL----GTNLFSGAV--YVLLVTSIII---CLVS 73
            |:..||:.::   :..|:...:...|..:|.:|    .|.|...||  |..:|..::|   |.:.
Zfish    14 LYALNFLFWL---MALCVLGVSAYLRDQLNNVLTLTADTRLEEAAVRTYSPVVHPVVIAVCCFLI 75

  Fly    74 FLGCVGAGKEVKC---LLLTYFIIVALVFVTMLIGGVLGYVFRERVQQTMRQEMRSTMALYGSRR 135
            .:..||....:||   ||..||..:.::|...|..||..| ....||::....::|.|..:|.:|
Zfish    76 IVAMVGYCGTLKCNLLLLSWYFGSLMVIFCVELASGVWTY-DEPMVQRSDMISLKSRMPHFGLQR 139

  Fly   136 E--ITQAWDLTQERLQCCGVDTWHDWNRYGPV---PESCCQELFGGQRKECTIFPTITNLYNQGC 195
            .  :|.||:..|..|:||||..:.||.....:   |:|||...:.|..::.. :..:::||.:||
Zfish   140 YQWLTHAWNALQTELKCCGVIYFTDWLEMTEMEWPPDSCCSNQYPGCARQAH-YNDLSDLYQEGC 203

  Fly   196 LYVTTNFIR--DHAAVIGGTSIAVAILMIFGMIFSCLL 231
            .....:|||  ....|:....:::.:..|..|..:..|
Zfish   204 GPKIYSFIRGTKQLQVLRFLGVSIGVAQILAMTLTVTL 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp74FNP_524132.1 Tetraspanin 14..233 CDD:459767 61/233 (26%)
NET-5_like_LEL 110..207 CDD:239418 30/103 (29%)
tspan12NP_957446.1 Tetraspanin 10..243 CDD:459767 61/233 (26%)
TM4SF12_like_LEL 113..215 CDD:239410 30/103 (29%)

Return to query results.
Submit another query.