DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp74F and Tspan3

DIOPT Version :10

Sequence 1:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster
Sequence 2:XP_063121188.1 Gene:Tspan3 / 300733 RGDID:1359444 Length:270 Species:Rattus norvegicus


Alignment Length:245 Identity:62/245 - (25%)
Similarity:107/245 - (43%) Gaps:37/245 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MDCCGQFVKYSLFIANFVIFVGGAIVFC----LTLWTLVDRSFVNELLGTNLFSGAVYVLLVTSI 67
            |..||.....::.:...:||.|.|.:.|    ....|..|.....|.:.| ||...  |::....
  Rat     1 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYT-LFPAV--VIMAVGA 62

  Fly    68 IICLVSFLGCVGAGKEVKCLLLTYFIIVALVFVTMLIGGVLGYVFRERVQQTMRQEMRSTMALYG 132
            ::.::..:||....:|.:|.|.|:..|:.|||||.::..|||||:|.:|:..:.:.::.....|.
  Rat    63 LLFIIGLIGCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYN 127

  Fly   133 SRRE--ITQAWDLTQERLQCCGVDTWHDW--------NRYGPVPESCCQELFGGQRKECT-IFPT 186
            ....  .::|.|..|.:|.|||:..:.||        .:...||.|||:|    ..:.|. ....
  Rat   128 GTNSDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRE----TARSCNGSLAN 188

  Fly   187 ITNLYNQGCLYVTTNFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIE 236
            .::||.:||..:....:::             |||  .:|::.|.|..|:
  Rat   189 PSDLYAEGCEALVVKKLQE-------------ILM--HVIWAALAFAAIQ 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp74FNP_524132.1 Tetraspanin 14..233 CDD:459767 57/233 (24%)
NET-5_like_LEL 110..207 CDD:239418 25/107 (23%)
Tspan3XP_063121188.1 None

Return to query results.
Submit another query.