DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp74F and tsp-21

DIOPT Version :10

Sequence 1:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_001370185.1 Gene:tsp-21 / 259720 WormBaseID:WBGene00023491 Length:301 Species:Caenorhabditis elegans


Alignment Length:237 Identity:54/237 - (22%)
Similarity:107/237 - (45%) Gaps:21/237 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 FIANFVIFVGGAIVFCLTLWTLVDRSFVNELLGTNLFS-GAVYVLLVTSIIICLVSFLGCVGAGK 82
            |:||....:.|.....:.:|....::...||..|:..: .|..:.:.|.:.|.::..:|.:|...
 Worm    18 FLANVCFLISGLSSLIVGVWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSW 82

  Fly    83 EVKCLLLTYFIIVALVFVTMLIGGVLGYVFRERVQQTMRQEM------RSTMALYGSRREITQAW 141
            ..|.||.:|...|.|:.:...|..:.|.:.:|..::.:|:.|      .:.:...|...:::..|
 Worm    83 SNKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLSLTW 147

  Fly   142 DLTQERLQCCGVDTWHDW--------NRYGPVPESCCQ-ELFGGQR--KECTIFPTITN-LYNQG 194
            |..|..|||||||.:.||        |.|  .|:|||. :.|..:.  :.|...|...: ||.:|
 Worm   148 DHLQRELQCCGVDNYTDWHYSVHWPNNLY--TPDSCCDPQHFDAENGTENCGKLPDEQSLLYQKG 210

  Fly   195 CLYVTTNFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIE 236
            |....::::..|..::...:..:.::.|..:|.|.::..:::
 Worm   211 CFPKFSDWLYHHIILVNWVTSILFVVEILLLILSLVVLRVLK 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp74FNP_524132.1 Tetraspanin 14..233 CDD:459767 54/232 (23%)
NET-5_like_LEL 110..207 CDD:239418 29/114 (25%)
tsp-21NP_001370185.1 Tetraspanin 17..>158 CDD:459767 31/139 (22%)
CD151_like_LEL 106..223 CDD:239408 30/118 (25%)

Return to query results.
Submit another query.