DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp74F and Cd53

DIOPT Version :9

Sequence 1:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_036655.1 Gene:Cd53 / 24251 RGDID:2310 Length:219 Species:Rattus norvegicus


Alignment Length:232 Identity:71/232 - (30%)
Similarity:118/232 - (50%) Gaps:27/232 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGFSSRMDCCGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELLGTNL-FSGAVYVLLV 64
            ||.||.     :.:||.||..||:.:|.|..:....:..||..::  .:|..|| |.....||::
  Rat     1 MGMSSL-----KLLKYVLFFFNFLFWVCGCCILGFGIHLLVQNTY--GILFRNLPFLTLGNVLVI 58

  Fly    65 TSIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFVTMLIGGVLGYVFRERVQQTMRQEMRSTMA 129
            ...||.:|:||||:|:.||.||||:::|:::.|:.:..:...:|.:|:.:::...:.:.:..::.
  Rat    59 VGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLLILLAEVTLAILLFVYEKKINTLVAEGLNDSIQ 123

  Fly   130 LYGSRREITQAWDLTQERLQCCGVDTWHDWNRYGPVPESCCQELFGGQRKECTIFPTITNLYNQG 194
            .|.|......|||..|.:||||||:...||.. || |.||..   |...:.|         |.:|
  Rat   124 HYHSDNSTRMAWDFIQSQLQCCGVNGSSDWIS-GP-PSSCPS---GADVQGC---------YKKG 174

  Fly   195 CLYVTTNFIRDHAAVIGGTSIAVAILMIFGMIFSCLL 231
            ..:..:||:     .||..:|.|.::.:.||.|:..|
  Rat   175 QAWFHSNFL-----YIGIVTICVCVIQVLGMSFALTL 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp74FNP_524132.1 Tetraspannin 14..231 CDD:395265 66/217 (30%)
Cd53NP_036655.1 Tetraspannin 9..210 CDD:278750 67/219 (31%)
CD53_like_LEL 104..186 CDD:239417 26/100 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19282
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X124
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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