DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp74F and Tspan18

DIOPT Version :9

Sequence 1:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster
Sequence 2:NP_899003.1 Gene:Tspan18 / 241556 MGIID:1917186 Length:248 Species:Mus musculus


Alignment Length:247 Identity:70/247 - (28%)
Similarity:121/247 - (48%) Gaps:23/247 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELLGTN-LFSGAVYVLLVTSIIICLVS 73
            |...:||.:|:.||.:|:|||.:..:.:|.|||.:...|::.|| |.:...|::|....::.|:.
Mouse     5 CLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTGAYIVLAMGGLLFLLG 69

  Fly    74 FLGCVGAGKEVKCLLLTYFIIVALVFVTMLIGGVLGYVFRERV-QQTMRQEMRSTMALYGSRREI 137
            ||||.||.:|.:||||.:|:.:.::|:..|...:|.::|||.: ::...:|:.............
Mouse    70 FLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGDNDTDVF 134

  Fly   138 TQAWDLTQERLQCCGVDTWHDWNRYG----------PVPESCCQ---ELFGG---QRKECTI--F 184
            :..|:.......||||:...|:....          .||::||:   :...|   .|:||.:  .
Mouse   135 SATWNSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPKACCRREPQTRDGVVLSREECQLGRN 199

  Fly   185 PTITNLYNQGCLYVTTNFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIE 236
            |.|.   .|||..|..|....:..:.|..:|.|..:.:|.|:|:..||..|:
Mouse   200 PFIN---KQGCYTVILNTFETYVYLAGAFAIGVLAIELFLMVFAMCLFRGIQ 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp74FNP_524132.1 Tetraspannin 14..231 CDD:395265 66/236 (28%)
Tspan18NP_899003.1 Tetraspannin 10..243 CDD:366035 66/235 (28%)
uroplakin_I_like_LEL 105..218 CDD:239409 25/115 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X124
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.870

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