DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpRS-m and MSW1

DIOPT Version :9

Sequence 1:NP_001262001.1 Gene:TrpRS-m / 39989 FlyBaseID:FBgn0036763 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_010554.1 Gene:MSW1 / 851861 SGDID:S000002676 Length:379 Species:Saccharomyces cerevisiae


Alignment Length:349 Identity:145/349 - (41%)
Similarity:214/349 - (61%) Gaps:33/349 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 VFSGIQPTGSLHLGNYLGAVRKWV---QLQNARDDVTVCIVDLHSITMPH-NPPLLRENIFTMAA 142
            |||.|||||..||||||||.|.|.   :|:....::...:.|||:||:|. :..:.|:......|
Yeast    37 VFSMIQPTGCFHLGNYLGATRVWTDLCELKQPGQELIFGVADLHAITVPKPDGEMFRKFRHEAVA 101

  Fly   143 TLLACGIDPTKSTLFVQSAVAEHAEFNWILSSLTTMPRLAQLPQFREKSR---------LLKD-- 196
            ::||.|:||.|:::..|||:.:|:|.:|:||:|.:|..|.::.|::.||.         |:.|  
Yeast   102 SILAVGVDPEKASVIYQSAIPQHSELHWLLSTLASMGLLNRMTQWKSKSNIKQSTNGDYLVNDSD 166

  Fly   197 ---VPLGLYVYPVLQAADIMLYKSTHVPVGADQIQHIQLAQHLARIYNGRYGETF---PVCTAII 255
               |.|||:.|||||||||:||||||||||.||.||::|.:|||..:|..|.:.|   || |.:.
Yeast   167 VGKVRLGLFSYPVLQAADILLYKSTHVPVGDDQSQHLELTRHLAEKFNKMYKKNFFPKPV-TMLA 230

  Fly   256 EDGDASRVLSLRDPSKKMSKSEANPKATINLCDSPDLITQKIKKAVTDFTSD-ITYNPGKRAGVS 319
            :   ..:||||..|.||||||:.|..:.|.|.|.|..|.:||:||:||..|| ..|:|.:|.|||
Yeast   231 Q---TKKVLSLSTPEKKMSKSDPNHDSVIFLNDEPKAIQKKIRKALTDSISDRFYYDPVERPGVS 292

  Fly   320 NLVNIHAQVTGQSIKTVVNEAATLDTAK-YKDRVAEAVVEHLRPIREQIHHHMTKRNEMIYL--- 380
            ||:||.:.:..:||:.||.:.:..:..: :||.|:|.::|.|:..|.:...::   ||..||   
Yeast   293 NLINIVSGIQRKSIEDVVEDVSRFNNYRDFKDYVSEVIIEELKGPRTEFEKYI---NEPTYLHSV 354

  Fly   381 LEVGAEKARQQARQTLNDVKQRLG 404
            :|.|..|||::|.:.|.|:.:.:|
Yeast   355 VESGMRKAREKAAKNLADIHKIMG 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpRS-mNP_001262001.1 PRK00927 82..406 CDD:234866 145/349 (42%)
TrpRS_core 82..359 CDD:173903 129/299 (43%)
MSW1NP_010554.1 trpS 33..379 CDD:272975 145/349 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344145
Domainoid 1 1.000 218 1.000 Domainoid score I468
eggNOG 1 0.900 - - E1_COG0180
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5673
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1214
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003309
OrthoInspector 1 1.000 - - oto98925
orthoMCL 1 0.900 - - OOG6_101334
Panther 1 1.100 - - LDO PTHR43766
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1460
SonicParanoid 1 1.000 - - X2207
TreeFam 1 0.960 - -
1413.680

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