DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED19 and med19

DIOPT Version :9

Sequence 1:NP_001287103.1 Gene:MED19 / 39987 FlyBaseID:FBgn0036761 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_001095276.1 Gene:med19 / 100124299 XenbaseID:XB-GENE-940493 Length:249 Species:Xenopus tropicalis


Alignment Length:251 Identity:94/251 - (37%)
Similarity:126/251 - (50%) Gaps:44/251 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHT--------------------------- 49
            |.|.|...|...||.      |.......|||.|...|                           
 Frog    13 PSSIPSAPGPPSVVP------TCTGAFVSGKTQTSTPTVPGPPLPIPPPLSSSSSGEDSSRRPAA 71

  Fly    50 GPFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENST 114
            ||||.::|.|..::|||..:|:..|.|.|:.:||..||.||.|::||.::||:.| .....:||:
 Frog    72 GPFYILRELPGLSDLTGSVNLILHYNLEHSFSKFCGKKMKEKLSNFLPDLPGMID-TPGAQDNSS 135

  Fly   115 LRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTGQ 179
            |||:||||||.|....|||...|.|||||.||||||.|..::.|.:|...|||:.:.::   ...
 Frog   136 LRSLIEKPPICGNSFTPLTGALLTGFRLHTGPLPEQCRLMHIQPPKKKNKKHKQSRTQE---PAP 197

  Fly   180 ESTLLDSAGLETYEKKHKKQKRHEDDKERKKRKKEKKRKKKNQSPE-PGVGLLPGG 234
            ..|..||      :.:.||:|:.|||.||:::||:||:||...||| ||.|....|
 Frog   198 PETPSDS------DHRKKKKKQREDDPERRRKKKDKKKKKSRHSPEHPGAGSSQSG 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED19NP_001287103.1 Med19 50..202 CDD:287279 64/151 (42%)
med19NP_001095276.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68 12/60 (20%)
Med19 72..243 CDD:287279 80/180 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..249 29/79 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 151 1.000 Domainoid score I4312
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 152 1.000 Inparanoid score I4241
OMA 1 1.010 - - QHG48661
OrthoDB 1 1.010 - - D1484317at2759
OrthoFinder 1 1.000 - - FOG0006079
OrthoInspector 1 1.000 - - oto105070
Panther 1 1.100 - - LDO PTHR22536
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2633
SonicParanoid 1 1.000 - - X4380
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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