Protein Alignment Grd and glra4a

DIOPT Version :9

• Sequence 1: NP_524131.1
• Gene: Grd / 39984
• FlyBaseID: FBgn0001134
• Length: 686
• Species: Drosophila melanogaster
• Sequence 2: XP_005169655.1
• Gene: glra4a / 83413
• ZFINID: ZDB-GENE-010410-3
• Length: 457
• Species: Danio rerio
• Alignment Length: 643
• Identity: 188/643 - (29%)
• Similarity: 259/643 - (40%)
• Gaps: 244/643 - (37%)

  Fly    78 RGDTHRLGEMGTSL-SSSLPSSWLTQSNNHANISELLDNLL---RGYDNSIRPDFGGPPATIEVD 138
            :|...|||.....: |||.|      :....:.|:.||.|:   .|||..|||:|.|||..:..:
Zfish    18 QGGFIRLGSCKEEIKSSSRP------AQKPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCN 76

  Fly   139 IMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAFEGAQD-TLALSVSMLARIWKPDTYFYNGKQSY 202
            |.:.|.|.|:|..|.|.::.:.||.|.|.|||:....| :|.|..|||..|||||.:|.|.|.:.
Zfish    77 IFINSFGSITETTMDYRLNVFLRQQWNDPRLAYSEYPDASLDLDPSMLDSIWKPDLFFANEKGAN 141

  Fly   203 LHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNK 267
            .|.:||.||.:||:|||.||||.|||:...|||:|.:||||||.|.::..|||||.:|:|:.|..
Zfish   142 FHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLIFEWLS 206

  Fly   268 ERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAK 332
            :. ||.:|:|:.|.||.|.:                        .||            .|...|
Zfish   207 DN-PVQVADDLTLPQFVLKE------------------------EKD------------LGYCTK 234

  Fly   333 NQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQ 397
            :              :.||:                         ::.:.|.|||:|.||.:|||
Zfish   235 H--------------YNTGK-------------------------FTCIEVKFHLERQMGYYLIQ 260

  Fly   398 VYGPCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSF 462
            :|.|..|:|:|||||||:|.:|...||.||||||||||.....:|..||||||..|:|.::.:..
Zfish   261 MYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCL 325

  Fly   463 GFIFATILQFAVVH--------------------------------YYTKYGSGECYFIIEELDS 495
            .|:||.:|::|.|:                                |:..||.|.|      |.:
Zfish   326 LFVFAALLEYAAVNFVSRQHKEFIRLRKKQRRQRIEEELVRESRGFYFRGYGLGHC------LQT 384

  Fly   496 ESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKLL 560
            :.|.:        ..||              ::..||||.::
Zfish   385 KDGTA--------VEGS--------------SVFAPPPPVQV----------------------- 404

  Fly   561 GLFDWR--RRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGGRRRMSY 623
             |:|..  |:|...||
Zfish   405 -LYDGEAVRKRFVDRA------------------------------------------------- 419

  Fly   624 YRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGY-LSRSSRILAN 680
                                 .:||..||.||||.|::.|||||..| :.|...|.||
Zfish   420 ---------------------KRIDTISRAVFPLSFLIFNVFYWITYKVLRHEDIHAN 456

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Grd	NP_524131.1	Neur_chan_LBD	110..326	CDD:280998	88/219 (40%)
		LIC	111..670	CDD:273305	174/596 (29%)
		Neur_chan_memb	398..667	CDD:280999	71/302 (24%)
glra4a	XP_005169655.1	LIC	27..445	CDD:273305	179/621 (29%)
		Neur_chan_LBD	48..254	CDD:280998	96/281 (34%)
		Neur_chan_memb	261..442	CDD:280999	71/302 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810