DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and glra2

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001161371.1 Gene:glra2 / 793646 ZFINID:ZDB-GENE-090407-1 Length:448 Species:Danio rerio


Alignment Length:642 Identity:179/642 - (27%)
Similarity:266/642 - (41%) Gaps:211/642 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 RSNLRIFKLLISCCLLMLCIYPNAWPWSIGPGSGPFSVSADSIKGRGDTHRLGEMGTSLSSSLPS 97
            |.::::...|::|.:.||       .:.:..|..|                  ::.:|.||..| 
Zfish     3 RPSVKLLTTLLACLMEML-------NFRVSSGKDP------------------DLLSSSSSMSP- 41

  Fly    98 SWLTQSNNHANISELLDNLL---RGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCY 159
                        |:.||.|:   .|||..|||:|.|||..:..:|.:.|.|.::|..|.|.::.:
Zfish    42 ------------SDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIF 94

  Fly   160 FRQSWVDKRLAF-EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLY 223
            .||.|.|.|||: |....:|.|..|||..|||||.:|.|.|.:..|.:||.||.:||:::|.|||
Zfish    95 LRQKWNDPRLAYSEYPDSSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRIFKDGTVLY 159

  Fly   224 SSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDC 288
            |.|||:...|||:|.:||||:|.|.::..|||||.:|:|:.| .::.||.:|:.:.|.||.:.| 
Zfish   160 SIRLTLILSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEW-LDKGPVQVADGLTLPQFLIRD- 222

  Fly   289 PAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRD 353
                                   .||            .|...|:              :.||: 
Zfish   223 -----------------------EKD------------LGYCTKH--------------YNTGK- 237

  Fly   354 ATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNRE 418
                                    ::.:.|.|||:|.||.:|||:|.|..|:|:|||||||:|.:
Zfish   238 ------------------------FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMD 278

  Fly   419 ATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGS 483
            |...||:||||||||||.....:|..||||||..|:|.::.:...|:||.:|::|.|::.:    
Zfish   279 AAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAGVNFVS---- 339

  Fly   484 GECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPR 548
                                                                            |
Zfish   340 ----------------------------------------------------------------R 340

  Fly   549 NRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISP 613
            .::..|           |.:|:..|...:||..|.:....:... ||.....|.....|..:|..
Zfish   341 QQKEFL-----------RLKRRQRRTQKEEDLQDGRLHFSSYNT-TTCVKDGAVVKNTQVNQIQQ 393

  Fly   614 PTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGY 670
            |       |..:..|...::...|      ..:||..||..|||.|::.|||||..|
Zfish   394 P-------SILKNTETNRKKFVDR------AKRIDTISRAAFPLAFLIFNVFYWITY 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 83/219 (38%)
LIC 111..670 CDD:273305 166/562 (30%)
Neur_chan_memb 398..667 CDD:280999 68/268 (25%)
glra2NP_001161371.1 LIC 44..437 CDD:273305 166/561 (30%)
Neur_chan_LBD 45..251 CDD:280998 91/281 (32%)
Neur_chan_memb 258..434 CDD:280999 68/268 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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