DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and gabrd

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_700099.5 Gene:gabrd / 571422 ZFINID:ZDB-GENE-081105-170 Length:459 Species:Danio rerio


Alignment Length:605 Identity:163/605 - (26%)
Similarity:249/605 - (41%) Gaps:191/605 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 LGEMGTSLSSSLPSSWLTQSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPIS 148
            |.::|..:.:.:..|||..          ||:|::||..:.||..||||..:.:.|.|.|:..||
Zfish    26 LSDIGDYVGTDIEISWLPN----------LDDLMKGYARNFRPGIGGPPVNVAMAIEVASIDHIS 80

  Fly   149 EVDMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFV 213
            |.:|.|:|..:.||||.|.||::.....||.|....:.::|.|||:..|.|.::.|.:|..||.:
Zfish    81 EANMEYTMTVFLRQSWRDDRLSYNHTNKTLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLI 145

  Fly   214 RIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDM 278
            |:..:|.:|||||:|....|.|:|..:|||.|:|.|...|:||::.|::|.|::.:..:...:.:
Zfish   146 RLQPDGVILYSSRITSTVACDMDLTKYPMDEQECMLDLESYGYSSEDIVYHWSESQKLIHGLDKL 210

  Fly   279 KLSQFDLVDCPAGNLTDIV-YKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLK 342
            :||||.:.|...  :|::: :|:|...|:                                    
Zfish   211 ELSQFTITDYRF--VTEMMNFKSAGRFPR------------------------------------ 237

  Fly   343 LDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVV 407
                                                  |.:.|.|:|:.|.::||.|.|..|||.
Zfish   238 --------------------------------------LSLRFQLRRNRGVYIIQSYMPSILLVA 264

  Fly   408 LSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQF 472
            :||||||:::.|...|||||||||||||.|.:.||:.||:.|...|||.:.::.:.|:||.::::
Zfish   265 MSWVSFWISQSAVPARVSLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALIEY 329

  Fly   473 AVVHYYTKYGSGECYFIIEELDSES----GESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPP 533
            |..||...|...|...:....::||    |:.                       :|...|:...
Zfish   330 AFAHYNADYSKKEKAKVKTNKNAESMVKNGKQ-----------------------AMVLFSLSVA 371

  Fly   534 PTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAA 598
            ....|:|.| ||:.|:.|                                          .:.||
Zfish   372 GMNQGLLIS-NRQSRSHR------------------------------------------ASDAA 393

  Fly   599 AAAAQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNS-------------VSKIDRA 650
            ||||..                     .||.|.|....|..|..|             ...||..
Zfish   394 AAAADP---------------------HEETETRSATSRRAQKESSEEKKCCKCKPIDADTIDIY 437

  Fly   651 SRIVFPLLFILINVFYWYGY 670
            :|.|||..|.::||.||..|
Zfish   438 ARAVFPFTFAVVNVIYWVAY 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 72/216 (33%)
LIC 111..670 CDD:273305 157/576 (27%)
Neur_chan_memb 398..667 CDD:280999 76/285 (27%)
gabrdXP_700099.5 LIC 45..457 CDD:273305 157/574 (27%)
Neur_chan_LBD 45..247 CDD:280998 75/277 (27%)
Neur_chan_memb 256..454 CDD:280999 76/284 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6772
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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