DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and gabrg3

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_009300843.1 Gene:gabrg3 / 567057 -ID:- Length:464 Species:Danio rerio


Alignment Length:592 Identity:179/592 - (30%)
Similarity:255/592 - (43%) Gaps:187/592 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 LTQSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSW 164
            |....:..:.:::|:|||:.||..:|||.|..|..|:|||.|.|:||:|.::|.|.:|..|.|:|
Zfish    38 LAPKTHETDATQILNNLLKEYDKKLRPDIGVKPTVIDVDIYVNSIGPVSSINMEYQIDIIFAQTW 102

  Fly   165 VDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTI 229
            .|.||.:......|.|:.:|:..||.|||.|.|.|.:..|.|||||:.:||:.:|::||:.||||
Zfish   103 TDSRLRYNSTMKILTLNSNMVGLIWLPDTIFRNSKSADSHWITTPNQLLRIWNDGKILYTLRLTI 167

  Fly   230 KAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLT 294
            .|.|.:.|.:||||...|||.|.|:||...::||:|.:.....|..:..:|.|||.:..      
Zfish   168 NAECQLQLHNFPMDEHSCPLIFSSYGYPRDEMIYKWRRNSVQAADQKSWRLYQFDFMGL------ 226

  Fly   295 DIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSG 359
                                  |.|:.|:.|.||                               
Zfish   227 ----------------------RNTTDVIKTTAG------------------------------- 238

  Fly   360 STTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRV 424
                             :|.::.|.|.|.|.||.|.||.|.||.|.|||||||||:.::||..|.
Zfish   239 -----------------DYVVMTVYFDLSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPART 286

  Fly   425 SL-----------------GITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQF 472
            :|                 |||||||||.|...|||.||:|||.||:|.||.:.|.|:||.::::
Zfish   287 ALVSCFKSMSCPGKCHCCQGITTVLTMTTLSTVARTSLPRVSYVTAMDLFVTVCFLFVFAALMEY 351

  Fly   473 AVVHYYTKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRL 537
            |.::||:                   .|...|..:    .|:...|.|:.:.       ||||  
Zfish   352 ATLNYYS-------------------YSARRPTCN----KTKRSNYSVLDVG-------PPPT-- 384

  Fly   538 GMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAA 602
             ::|..|           ||.      |            ::.||                    
Zfish   385 -VITLNN-----------SMY------W------------QEFDD-------------------- 399

  Fly   603 QAAAQAARISPPTGGRRRMSY---YRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINV 664
                  |.:.....|:...|:   |...:..|.|||:   .:..:.::|..||:.||..|:|.||
Zfish   400 ------ACVYECLDGKDCQSFFCCYEECKDGAWRKGR---VHIDILELDAYSRVFFPTSFLLFNV 455

  Fly   665 FYWYGYL 671
            .||.|||
Zfish   456 VYWVGYL 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 80/215 (37%)
LIC 111..670 CDD:273305 175/578 (30%)
Neur_chan_memb 398..667 CDD:280999 80/288 (28%)
gabrg3XP_009300843.1 Neur_chan_LBD 47..253 CDD:280998 88/281 (31%)
LIC 49..461 CDD:273305 175/578 (30%)
Neur_chan_memb 260..458 CDD:280999 80/288 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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