DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and HisCl1

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster


Alignment Length:646 Identity:139/646 - (21%)
Similarity:229/646 - (35%) Gaps:240/646 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 KLLISCCLLMLCIYPNAWPWSIGPGSGPFSVSADSIKGRGDTHRLGEMGTSLSSSLPSSWLTQSN 104
            ||:...||:.|.||.:|...||        .....:.|..:.....|:.:...|||         
  Fly     7 KLVEFRCLIALAIYLHALEQSI--------QHCHCVHGYRNNTESAELVSHYESSL--------- 54

  Fly   105 NHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRL 169
               ::.::|....:.||.:..|...|.|..:...:.|.|:..|:|..|||..|.:..|||.|.||
  Fly    55 ---SLPDILPIPSKTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRL 116

  Fly   170 AF--EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAG 232
            ..  ..::....|.|..|..||:||.:|.|.|:...|.::.||.::.:|.:..:||.|:||:...
  Fly   117 RLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLS 181

  Fly   233 CPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDL-----VDCPAGN 292
            |.|....:|.|.|.|.:...|..:|..|:::.||. ..|:.:..:::|.|.|:     .||    
  Fly   182 CAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNM-TDPLVVNTEIELPQLDISNNYTTDC---- 241

  Fly   293 LTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGG 357
                                                                             
  Fly   242 ----------------------------------------------------------------- 241

  Fly   358 SGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATAD 422
                     ||...|.:   ::.|.:.|:|:|.:|..|...|.|..|:||:||:|||:..||...
  Fly   242 ---------TIEYSTGN---FTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPA 294

  Fly   423 RVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECY 487
            ||:||:|::||:.....:::..||.|||..|:|.::.....|:|.::::||||            
  Fly   295 RVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVV------------ 347

  Fly   488 FIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRH 552
                               ::|.|...:|                                    
  Fly   348 -------------------NNFMGPVATK------------------------------------ 357

  Fly   553 GLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGG 617
               :||  |..|          ::..|.||.::.|:                             
  Fly   358 ---AMK--GYSD----------ENISDLDDLKSALQ----------------------------- 378

  Fly   618 RRRMSYYRREEMEARRKGKRTPQYNSVSK-------IDRASRIVFPLLFILINVFYWYGYL 671
                 ::|...:|        |||::...       ||:.||..||..|.::|:.||..:|
  Fly   379 -----HHRESIIE--------PQYDTFCHGHATAIYIDKFSRFFFPFSFFILNIVYWTTFL 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 56/222 (25%)
LIC 111..670 CDD:273305 123/572 (22%)
Neur_chan_memb 398..667 CDD:280999 56/275 (20%)
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 61/276 (22%)
Neur_chan_memb 270..>350 CDD:280999 32/110 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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