Sequence 1: | NP_524131.1 | Gene: | Grd / 39984 | FlyBaseID: | FBgn0001134 | Length: | 686 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
Alignment Length: | 470 | Identity: | 97/470 - (20%) |
---|---|---|---|
Similarity: | 171/470 - (36%) | Gaps: | 151/470 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 112 LLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMG-----------PISEVDMTYSMDCYFRQSWV 165
Fly 166 DKRLAFEGAQDTLALSVSMLA--RIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLT 228
Fly 229 IKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNL 293
Fly 294 TDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGS 358
Fly 359 GSTTGLSGTITLETNHPSEYSMLMVNFH--LQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATA 421
Fly 422 DRVSLGITTVLTM-TFLGLEARTDLPKVSYPTALDFFV---FLSFGFIFATILQFAVVHYYTKYG 482
Fly 483 SGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRP 547
Fly 548 RNRRHGLWSMKLLGL 562 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grd | NP_524131.1 | Neur_chan_LBD | 110..326 | CDD:280998 | 48/226 (21%) |
LIC | 111..670 | CDD:273305 | 97/470 (21%) | ||
Neur_chan_memb | 398..667 | CDD:280999 | 42/169 (25%) | ||
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 97/470 (21%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 55/293 (19%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 42/169 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45447359 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.030 |