Protein Alignment Grd and Glra4

DIOPT Version :9

• Sequence 1: NP_524131.1
• Gene: Grd / 39984
• FlyBaseID: FBgn0001134
• Length: 686
• Species: Drosophila melanogaster
• Sequence 2: NP_001178843.1
• Gene: Glra4 / 367912
• RGDID: 1564103
• Length: 456
• Species: Rattus norvegicus
• Alignment Length: 596
• Identity: 172/596 - (28%)
• Similarity: 237/596 - (39%)
• Gaps: 230/596 - (38%)

  Fly   110 SELLDNLL---RGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAF 171
            |:.||.|:   .|||..|||:|.|||..:..:|.:.|.|.::|..|.|.::.:.||.|.|.|||:
  Rat    44 SDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAY 108

  Fly   172 -EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPM 235
             |...|:|.|..|||..|||||.:|.|.|.:..|.:||.||.:||::||.||||.|||:...|||
  Rat   109 REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPM 173

  Fly   236 NLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKA 300
            :|.:||||||.|.::..|||||.:|:::.|.::.|.|.:||.:.|.||.|.|
  Rat   174 DLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRD------------- 225

  Fly   301 AAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLS 365
                       .||            .|...|:              :.||:
  Rat   226 -----------EKD------------LGYCTKH--------------YNTGK------------- 240

  Fly   366 GTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGITT 430
                        ::.:.|.|||:|.||.:|||:|.|..|:|:|||||||:|.:|...||.|||||
  Rat   241 ------------FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITT 293

  Fly   431 VLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVH------------------- 476
            |||||.....:|..||||||..|:|.::.:...|:||.:|::|.|:
  Rat   294 VLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFMRLRRKQRRR 358

  Fly   477 ------------YYTKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAIS 529
                        |:..||.|.|      |.:..|.                      |:...:|.
  Rat   359 HMEEDIIREGRFYFRGYGLGHC------LQARDGG----------------------PMEGSSIY 395

  Fly   530 MPPPPTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPT 594
            .|.|||.|
  Rat   396 SPQPPTTL--------------------------------------------------------- 403

  Fly   595 TSAAAAAAQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLF 659
                                           .:|.|..||    ...:...:||..||.|||..|
  Rat   404 -------------------------------LKEGETMRK----VYVDRAKRIDTISRAVFPFTF 433

  Fly   660 ILINVFYWYGY 670
            ::.|:|||..|
  Rat   434 LVFNIFYWVVY 444

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Grd	NP_524131.1	Neur_chan_LBD	110..326	CDD:280998	87/219 (40%)
		LIC	111..670	CDD:273305	170/593 (29%)
		Neur_chan_memb	398..667	CDD:280999	68/299 (23%)
Glra4	NP_001178843.1	LIC	9..444	CDD:273305	171/594 (29%)
		Neur_chan_LBD	47..254	CDD:280998	95/281 (34%)
		Neur_chan_memb	261..441	CDD:280999	68/299 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810