DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and lgc-38

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001355511.1 Gene:lgc-38 / 3565717 WormBaseID:WBGene00017389 Length:479 Species:Caenorhabditis elegans


Alignment Length:611 Identity:164/611 - (26%)
Similarity:256/611 - (41%) Gaps:213/611 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 TQSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWV 165
            :..|...|::.|||.|:..:|..|||::||||..:.:...|.::..:|||.|.|::|.|.||.|.
 Worm    44 SNENLENNVTRLLDKLIASHDRRIRPNYGGPPIEVNITAHVTTISAVSEVSMDYTLDLYLRQIWK 108

  Fly   166 DKRLAFEG-AQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTI 229
            |.|||:|. .:|:|.:.:.|:..||.|||:|.|.|:|:.|..|:.|.|:||..:|.||.|.|||:
 Worm   109 DPRLAWESDVEDSLTIGIDMVKTIWTPDTFFPNEKKSFFHEATSHNSFLRIDNHGNVLRSIRLTV 173

  Fly   230 KAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLT 294
            .|.|||:|..||:|.|:|.|:..|:||:|.|:||.|:... .|.|.|::.|:.|.:         
 Worm   174 TANCPMSLHTFPLDRQECALEVESYGYSTKDIIYHWHGTN-AVTIDENVHLAHFTI--------- 228

  Fly   295 DIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSG 359
                                                .:::|:                       
 Worm   229 ------------------------------------GEHKHI----------------------- 234

  Fly   360 STTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRV 424
                 ..||:|.|.:   ||.|...|..:|::|.:|||:|.|..|:||:|||||||||||...||
 Worm   235 -----ERTISLSTGN---YSRLTAYFLFKRNIGFYLIQIYFPSSLIVVISWVSFWLNREAVQARV 291

  Fly   425 SLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTK--------- 480
            ::|:|||||||.|.......||||||..:||.|:.:.|..:||::|::|.:.|..|         
 Worm   292 AIGVTTVLTMTTLMTSTNASLPKVSYVKSLDVFLGVCFFIVFASLLEYAAIGYLMKRNRSVPAAS 356

  Fly   481 ---YGSGECYFIIE-------------------ELDSESGESETEPLTSDFRGS------TESKI 517
               |...|.:|.|:                   |...:...:..:....:::.:      ::..:
 Worm   357 PVQYYETEEFFEIQCHPKFVRGAINYCDGVLKREASRKKSRNRRDSSMKNYQNNNIHHRPSDGHV 421

  Fly   518 YEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDD 582
            .:.||| :..:.|||.|.          :|:|   |.|                           
 Worm   422 DQRIPL-LSMVPMPPIPF----------KPQN---GAW--------------------------- 445

  Fly   583 EQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKI 647
                                                                ||..|     :::
 Worm   446 ----------------------------------------------------GKVRP-----AQV 453

  Fly   648 DRASRIVFPLLFILINVFYWYGYLSR 673
            |..||..||:.|::.::.||..|:::
 Worm   454 DLFSRFAFPIFFVIFHIVYWTYYINQ 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 77/216 (36%)
LIC 111..670 CDD:273305 161/596 (27%)
Neur_chan_memb 398..667 CDD:280999 68/305 (22%)
lgc-38NP_001355511.1 LIC 42..476 CDD:273305 163/606 (27%)
LGIC_ECD_GABAR_RDL-like 76..257 CDD:349809 74/257 (29%)
Cys-loop 177..191 CDD:349809 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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