DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grd and CG6927

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster


Alignment Length:665 Identity:143/665 - (21%)
Similarity:241/665 - (36%) Gaps:185/665 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 FKLLISCCLLMLCIYPNAWPWSIGPGSGPFSVSADSIKGRGDTHRLGEMGTSLSSSLPSSWLTQS 103
            :.|:||  :|:.|:|.:|                                ::|....|:   ...
  Fly     3 WSLIIS--ILLNCLYASA--------------------------------SALDEDCPT---LDD 30

  Fly   104 NNHANISELLDNLLRG--YDNSIRP-DFGGPPATIEVDIMVRS----MGPISEVDMTYSMDCYFR 161
            .:..:.::|||.|..|  ||...|| .:......:.||:.:|:    |..:...|:.:.:....:
  Fly    31 GDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQ 95

  Fly   162 QSWVDKRLAFEGAQDTLALSVSMLAR------------IWKPDTYFYNGKQSYLHTITTPNKFVR 214
            ..::|.||.|.        :||...|            :|.|..:..|.:.|.:..:|..:....
  Fly    96 MRYLDPRLNFR--------NVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTS 152

  Fly   215 IYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMK 279
            |..:|.|:.|:|:.....|.:||..||.|.|.|.....|:.|.||:::..|.::||   |..|..
  Fly   153 ISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQKRP---ITYDGA 214

  Fly   280 LSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLD 344
            |           :||:.|.        :|.::|:          |......:..:|         
  Fly   215 L-----------HLTEFVL--------QRSWSNE----------TVINADLSDLRH--------- 241

  Fly   345 KGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLS 409
             |||.                          ..||.|....||.|.:|.:|:..:.|..|:|.:|
  Fly   242 -GAFA--------------------------GNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAIS 279

  Fly   410 WVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAV 474
            ||||||..:....|::||.:|:||...|.......||||||....:.:......|||.::::||.
  Fly   280 WVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAF 344

  Fly   475 VHYYTKYGSGECYFIIEELDSES-GESETEPLTSDFRGSTESKIYEVIPLSMCA----------- 527
            |:...:....   ..:::|:|:. .:|...|.....|....|:.:....|...|           
  Fly   345 VNTIWRRKKS---VPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFN 406

  Fly   528 ----ISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLR 588
                :::|....:.|.:..:.|..|                                ..::..:.
  Fly   407 NYLTVNLPITTIKEGQVLDQQRTSR--------------------------------VVQKMDVN 439

  Fly   589 ANEAPTTSAAAAAAQAAAQAARISPP-TGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASR 652
            ..|:...|..:|.:..|..||..|.. |...|..|...:||::.......||| .....||..:|
  Fly   440 FVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQ-EIAMWIDSRAR 503

  Fly   653 IVFPLLFILINVFYW 667
            .||||.|::.|:|:|
  Fly   504 FVFPLSFLVFNLFFW 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 55/234 (24%)
LIC 111..670 CDD:273305 134/593 (23%)
Neur_chan_memb 398..667 CDD:280999 66/285 (23%)
CG6927NP_572194.1 LIC 3..520 CDD:273305 143/665 (22%)
Neur_chan_LBD 36..259 CDD:280998 64/298 (21%)
Neur_chan_memb 270..518 CDD:280999 66/283 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447284
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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