DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabrg2

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001380704.1 Gene:Gabrg2 / 29709 RGDID:61966 Length:474 Species:Rattus norvegicus


Alignment Length:592 Identity:170/592 - (28%)
Similarity:254/592 - (42%) Gaps:190/592 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 SW-LTQSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFR 161
            :| ||......:::.:|:|||.||||.:|||.|..|..|..|:.|.|:||::.::|.|::|.:|.
  Rat    53 TWVLTPKVPEGDVTVILNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFA 117

  Fly   162 QSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSR 226
            |:|.|:||.|......|.|:.:|:.:||.|||:|.|.|::..|.|||||:.:||:.:|||||:.|
  Rat   118 QTWYDRRLKFNSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLR 182

  Fly   227 LTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAG 291
            |||.|.|.:.|.:||||...|||:|.|:||...:::|:|.:....|......:|.||..|..   
  Rat   183 LTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGL--- 244

  Fly   292 NLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATG 356
                                     |.|::|:.|.:|                            
  Rat   245 -------------------------RNTTEVVKTTSG---------------------------- 256

  Fly   357 GSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATA 421
                                :|.::.|.|.|.|.||.|.||.|.||.|:|||||||||:|::|..
  Rat   257 --------------------DYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 301

  Fly   422 DRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGEC 486
            .|.|||||||||||.|...||..||||||.||:|.||.:.|.|:|:.::::..:||:..      
  Rat   302 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVS------ 360

  Fly   487 YFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRR 551
                                                                     ||:|..  
  Rat   361 ---------------------------------------------------------NRKPSK-- 366

  Fly   552 HGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTG 616
                                   |.|:.:.:...::.:.:|||......:|     ..:::..|.
  Rat   367 -----------------------DKDKKKKNPLLRMFSFKAPTIDIRPRSA-----TIQMNNATH 403

  Fly   617 GRRRMSYYRREEMEAR-----------------RKGKRTPQYNSVSKIDRASRIVFPLLFILINV 664
            .:.|...|..|.::.:                 |.|:   .:..::|:|..:||.||..|.|.|:
  Rat   404 LQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGR---IHIRIAKMDSYARIFFPTAFCLFNL 465

  Fly   665 FYWYGYL 671
            .||..||
  Rat   466 VYWVSYL 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 81/215 (38%)
LIC 111..670 CDD:273305 165/575 (29%)
Neur_chan_memb 398..667 CDD:280999 70/285 (25%)
Gabrg2NP_001380704.1 LIC 68..471 CDD:273305 165/574 (29%)
LGIC_ECD_GABAAR_G 89..270 CDD:349801 74/256 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2964
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.010

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