DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabra5

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_058991.2 Gene:Gabra5 / 29707 RGDID:61859 Length:464 Species:Rattus norvegicus


Alignment Length:596 Identity:191/596 - (32%)
Similarity:274/596 - (45%) Gaps:172/596 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SSLP-SSWLTQSNNHANI-SELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYS 155
            |.:| ||...::|::..| :.:||.||.||||.:||..|.....:..||.|.|.||:|:.:|.|:
  Rat    31 SQMPTSSVQDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYT 95

  Fly   156 MDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGR 220
            :|.:|||||.|:||.|:|....|.|:..:.::||.|||:|:|||:|..|.:|||||.:|:..:|.
  Rat    96 IDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGT 160

  Fly   221 VLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRW-NKERPPVAIAED-MKLSQF 283
            :||:.||||.|.|||.|.|||||...|||||||:.|..|:|:|.| |.....|.:||| .:|:|:
  Rat   161 LLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQY 225

  Fly   284 DLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAF 348
            .|:                                                              
  Rat   226 HLM-------------------------------------------------------------- 228

  Fly   349 GTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSF 413
                      |.|.   ||..:.|: ..||:::..:|||:|.:|.|:||.|.||.:.|:||.|||
  Rat   229 ----------GQTV---GTENISTS-TGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSF 279

  Fly   414 WLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYY 478
            |||||:...|...|:|||||||.|.:.||..||||:|.||:|:|:.:.:.|:|:.:::||.|:|:
  Rat   280 WLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYF 344

  Fly   479 TKYG---SGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGML 540
            ||.|   .|:......::..:..|......|:.|                          ..|.|
  Rat   345 TKRGWAWDGKKALEAAKIKKKERELILNKSTNAF--------------------------TTGKL 383

  Fly   541 TSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAA 605
            |.....|:.:..|                                       .|.:|...|:..|
  Rat   384 THPPNIPKEQLPG---------------------------------------GTGNAVGTASIRA 409

  Fly   606 AQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGY 670
            ::                      |...:.|:|  |||:||||:.||||||:||...|:.||..|
  Rat   410 SE----------------------EKTSESKKT--YNSISKIDKMSRIVFPILFGTFNLVYWATY 450

  Fly   671 LSRSSRILANT 681
            |:|...|...|
  Rat   451 LNREPVIKGAT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 87/217 (40%)
LIC 111..670 CDD:273305 180/563 (32%)
Neur_chan_memb 398..667 CDD:280999 76/271 (28%)
Gabra5NP_058991.2 LIC 15..450 CDD:273305 186/583 (32%)
LGIC_ECD_GABAAR_A5 58..256 CDD:349839 93/273 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..414 9/92 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2964
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2041
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.970

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