DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabrr1

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_058987.3 Gene:Gabrr1 / 29694 RGDID:61900 Length:480 Species:Rattus norvegicus


Alignment Length:632 Identity:181/632 - (28%)
Similarity:268/632 - (42%) Gaps:192/632 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 WPWSIG-------PGSGPFSVSADSIKG-------RG---DTHRLGEMGTSLSSSLPSSWLTQSN 104
            |.|.:.       ||.   .|...|.||       ||   |.|:.|......||.:..|.||:| 
  Rat    16 WGWVLAAESTVHWPGR---EVHEPSKKGSRPQRQRRGAHDDAHKQGSPILKRSSDITKSPLTKS- 76

  Fly   105 NHANISELLDNLLR--GYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDK 167
                     :.|||  .:|.|:||.||||...:.||:.|.|:..||||||.::|..|.|..|.|:
  Rat    77 ---------EQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDE 132

  Fly   168 RLAFEGAQD-TLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKA 231
            ||:|....: ::.....::.:||.||.:|.:.|:|::|..||.|..:|:..:|:||||.|:|:.|
  Rat   133 RLSFPSTNNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTA 197

  Fly   232 GCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDI 296
            .|.|:.:.||:|.|.|.|:..|:.||..|::..|.|....:...|.:.||||.:           
  Rat   198 MCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLI----------- 251

  Fly   297 VYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGST 361
                       :.|:.      |:|:                        ||          .|:
  Rat   252 -----------QEFHT------TTKL------------------------AF----------YSS 265

  Fly   362 TGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSL 426
            ||.             |:.|.:||.|:||:..||:|.|.|..|:|:|||||||::|.|...||.|
  Rat   266 TGW-------------YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPL 317

  Fly   427 GITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFIIE 491
            ||||||||:.:.......:|:|||..|:|.::::||.|:|.::|::|.|:|.|         .::
  Rat   318 GITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLT---------TVQ 373

  Fly   492 ELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWS 556
            |                   ..|.|:.|.|   .|...:|.|  |..||.|              
  Rat   374 E-------------------RKERKLREKI---SCTCGLPQP--RGVMLDS-------------- 400

  Fly   557 MKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRAN-EAPTTSAAAAAAQAAAQAARISPPTGGRRR 620
                             :.||.:.:|....:..| |.|.    ....|....:.|.||     :|
  Rat   401 -----------------SYSDGEVNDLGGYMPENGEKPD----RMMVQLTLASERGSP-----QR 439

  Fly   621 MSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYW 667
            .|          ::|.......:...||:.|||:||..:||.|:.||
  Rat   440 KS----------QRGSYVSMRINTHAIDKYSRIIFPAAYILFNLIYW 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 71/218 (33%)
LIC 111..670 CDD:273305 162/561 (29%)
Neur_chan_memb 398..667 CDD:280999 74/269 (28%)
Gabrr1NP_058987.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..67 10/38 (26%)
LIC 76..479 CDD:273305 163/569 (29%)
LGIC_ECD_GABAAR_rho 97..282 CDD:349806 71/259 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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