DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grd and Gabra2

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_017454595.1 Gene:Gabra2 / 289606 RGDID:61856 Length:504 Species:Rattus norvegicus


Alignment Length:597 Identity:192/597 - (32%)
Similarity:270/597 - (45%) Gaps:200/597 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 NNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKR 168
            ||....:.:||.||.||||.:||..|.....:..:|.|.|.||:|:.||.|::|.:|||.|.|:|
  Rat    90 NNITIFTRILDRLLDGYDNRLRPGLGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDER 154

  Fly   169 LAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGC 233
            |.|:|..:.|.|:..|.::||.|||:|:|||:|..|.:|.|||.:||..:|.:||:.|||::|.|
  Rat   155 LKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAEC 219

  Fly   234 PMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWN-KERPPVAIAED-MKLSQFDLVDCPAGNLTDI 296
            ||:|.|||||...|||||||:.||||:|.|.|. .....|.:|.| .:|:|:||:....|..|  
  Rat   220 PMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKET-- 282

  Fly   297 VYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGST 361
                                                        :|                 |:
  Rat   283 --------------------------------------------IK-----------------SS 286

  Fly   362 TGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSL 426
            ||             ||:::..:|||:|.:|.|:||.|.||.:.|:||.||||||||:...|...
  Rat   287 TG-------------EYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVF 338

  Fly   427 GITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYG---SGECYF 488
            |:|||||||.|.:.||..||||:|.||:|:|:.:.:.|:|:.:::||.|:|:||.|   .|:.  
  Rat   339 GVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKS-- 401

  Fly   489 IIEELDSESGE-------------SETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGML 540
            ::.:...|.|.             :....|:.|...||.||          :.:.|.|       
  Rat   402 VVNDKKKEKGSVMIQNNAYAVAVANYAPNLSKDPVLSTISK----------SATTPEP------- 449

  Fly   541 TSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAA 605
               |::|.|                    ||..|                               
  Rat   450 ---NKKPEN--------------------KPAEA------------------------------- 460

  Fly   606 AQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGY 670
                                          |:|  :||||||||.||||||:||...|:.||..|
  Rat   461 ------------------------------KKT--FNSVSKIDRMSRIVFPVLFGTFNLVYWATY 493

  Fly   671 LSRSSRILANTP 682
            |:|.. :|..:|
  Rat   494 LNREP-VLGVSP 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 89/217 (41%)
LIC 111..670 CDD:273305 185/576 (32%)
Neur_chan_memb 398..667 CDD:280999 80/284 (28%)
Gabra2XP_017454595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2964
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2041
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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