DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and glc-4

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_495489.2 Gene:glc-4 / 182971 WormBaseID:WBGene00001594 Length:500 Species:Caenorhabditis elegans


Alignment Length:587 Identity:151/587 - (25%)
Similarity:230/587 - (39%) Gaps:152/587 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 NLLRGYDNSIRPDFGGPP-------ATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAFE 172
            :||:.||.::||. |..|       ..:...:.:||:..:||.:|.:.....|||.|.|.||.|.
 Worm    50 DLLQDYDAAVRPS-GRTPYNDTRGAVMVTTSLNIRSISAVSEKNMEFVAQFRFRQEWYDDRLRFI 113

  Fly   173 GAQDTLA--------LSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTI 229
            ..|..|:        :.|:....:|.|||:|.|.|..:.|.:...|:|::|..:|:::|..|||:
 Worm   114 EHQGLLSSDYRNFEFIHVARDQSLWIPDTFFQNEKNGWYHMLNQENRFLKIRSDGKLIYDRRLTL 178

  Fly   230 KAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLT 294
            ...|.|:|:.:|||.|.|.:.|.|:.|||:|:.|.|  :.|.:.|.|..                
 Worm   179 HLACSMHLSRYPMDHQNCEIAFASYAYTTADIEYIW--DVPAIQIHEGA---------------- 225

  Fly   295 DIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSG 359
                ..|.|..:...|.|..   .|||..|                                   
 Worm   226 ----NGALPNFEIASFKNAS---CTSKTNT----------------------------------- 248

  Fly   360 STTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRV 424
                  ||          ||.|.|...|.|....||:|:|.|..:||.::|||:|::.::||.||
 Worm   249 ------GT----------YSCLKVEIRLNRVFSFFLLQLYIPSSMLVGVAWVSYWIDWKSTAARV 297

  Fly   425 SLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFI 489
            .|.|.|:|||........::||.|||..::|.:|.....|||.:::::|||:|            
 Worm   298 PLAIVTLLTMITTSHAINSNLPPVSYAKSIDIWVGACVVFIFFSLIEYAVVNY------------ 350

  Fly   490 IEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGL 554
            :..||......:.        ....|::..||.......|          |.|....|:.::   
 Worm   351 VGILDEHRQMKKA--------ACNRSRLSNVIENDNFGES----------LQSLTFSPQEKK--- 394

  Fly   555 WSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGGRR 619
                       |..|:.|:.:.:..|.|.:.....:..|..||..................|.|:
 Worm   395 -----------RLIRRRPKKNMEMQEGDFEAIEMVDRGPPRSAGLMEEGWTFHDTTDLVYIGQRK 448

  Fly   620 RMSYYR-REEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRILANTPD 683
            |:...| ...:.:|.:.:|         ||..:||:|||.|||.|..||..||....      ||
 Worm   449 RVELVRWCSVLSSRGRAER---------IDIIARIIFPLAFILFNFAYWSIYLEEED------PD 498

  Fly   684 AS 685
            .|
 Worm   499 ES 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 67/225 (30%)
LIC 111..670 CDD:273305 146/570 (26%)
Neur_chan_memb 398..667 CDD:280999 66/269 (25%)
glc-4NP_495489.2 LIC 26..491 CDD:273305 146/570 (26%)
Neur_chan_LBD 50..258 CDD:280998 73/284 (26%)
Neur_chan_memb 271..488 CDD:280999 66/269 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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