DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and lgc-46

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_497338.2 Gene:lgc-46 / 175279 WormBaseID:WBGene00022106 Length:508 Species:Caenorhabditis elegans


Alignment Length:597 Identity:145/597 - (24%)
Similarity:225/597 - (37%) Gaps:179/597 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 SNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDK 167
            :.|.||.|.:|..::..|:   |....|....:||::.|:.:..||::...:.:|.|..::|.|.
 Worm    60 TKNCANDSFILGTIMSNYN---RHKIPGGQVDVEVEVWVQEITTISDITSDFQLDIYIYETWYDP 121

  Fly   168 RLAF---EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTI 229
            .|.:   ...:..|:|:..:|.::|.|::.|.|.|.:.:|....||.|:.||.||.|..:.||.:
 Worm   122 ALNYAFMNPCKYNLSLNSVLLEKLWTPNSCFINSKTADIHKSPFPNIFLMIYANGTVWTNYRLKL 186

  Fly   230 KAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWN-----KERPPVAIAEDMKLSQFDLVDCP 289
            :..|.|:|..||.|...|.|.|.||.|.|.:|...|:     |.|      :.|:|:.::|||  
 Worm   187 QGPCIMDLTKFPFDNVTCSLTFESFNYNTDEVKMDWSVNGVQKMR------DKMELADYELVD-- 243

  Fly   290 AGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDA 354
                                         ..|:.||...||                        
 Worm   244 -----------------------------IHKIRTTEEYPA------------------------ 255

  Fly   355 TGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREA 419
                                 ..:..|.::|..:|..|.:::|.|.|..|.:.:||:||.|..:|
 Worm   256 ---------------------GYWHELTMSFEFKRRAGWYILQAYLPTYLTICISWISFALGSKA 299

  Fly   420 TADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSG 484
            ...|..||:.::|.|||.......:||:|||..|:|.::.....|:|.::|:.|.|.|.::    
 Worm   300 IPARTMLGVNSLLAMTFQFGNIIRNLPRVSYVKAIDVWMLSCMTFVFCSLLELAWVGYLSR---- 360

  Fly   485 ECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMP--PPPTRLGMLTS----R 543
                            |.||        |.:|..:  |.:..| ..|  |||.:.....|    |
 Worm   361 ----------------EEEP--------TSAKCLQ--PSAQVA-PKPCHPPPVQQNANNSSVHRR 398

  Fly   544 NRRPRNRRHGLWSMKLLGLFDWRRRRKPPR--------------ADSDEDEDDEQTQLRANEAPT 594
            .::|:|....    .||.|.|......||.              :.|...|......|..:||.|
 Worm   399 QKQPKNEEES----ALLSLRDNDYGYIPPGFGLNGNVANAMKSFSSSCSCEPTNVVNLMLDEAET 459

  Fly   595 TSAAAAAAQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLF 659
            .                  ||.....:|..:|.|:.|.             |||..|..:||.||
 Worm   460 I------------------PTSTSSSLSRKQRREILAH-------------KIDSVSVFMFPFLF 493

  Fly   660 ILINVFYWYGYL 671
            :|.|:.||..||
 Worm   494 VLFNIAYWQHYL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 58/223 (26%)
LIC 111..670 CDD:273305 139/586 (24%)
Neur_chan_memb 398..667 CDD:280999 72/288 (25%)
lgc-46NP_497338.2 Neur_chan_LBD 73..504 CDD:332142 138/581 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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