DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and avr-14

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001020963.1 Gene:avr-14 / 172270 WormBaseID:WBGene00000232 Length:430 Species:Caenorhabditis elegans


Alignment Length:586 Identity:154/586 - (26%)
Similarity:237/586 - (40%) Gaps:208/586 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 ELLDNLLRGYD--------NSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDK 167
            |::..:|:.||        |:..||.|| |..:.|:|.:||:..|.:|:|.||....||:.|.|:
 Worm    29 EIIQRILKDYDWRVRPRGMNATWPDTGG-PVLVTVNIYLRSISKIDDVNMEYSAQFTFREEWTDQ 92

  Fly   168 RLAFEGAQDT--------LALSVSMLA----RIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGR 220
            |||:|..:::        :.|:.|..|    :||.|||:|.|.|::..|.|..||..:||::||:
 Worm    93 RLAYERYEESGDTEVPPFVVLATSENADQSQQIWMPDTFFQNEKEARRHLIDKPNVLIRIHKNGQ 157

  Fly   221 VLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMK--LSQF 283
            :|||.||::...|||:|..:|:|.|.|.:...|:.|||.|:.|.| ||:.|:...:.::  |..|
 Worm   158 ILYSVRLSLVLSCPMSLEFYPLDRQNCLIDLASYAYTTQDIKYEW-KEKKPIQQKDGLRQSLPSF 221

  Fly   284 DLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAF 348
            :|.|                                  |:|.:.                     
 Worm   222 ELQD----------------------------------VVTDYC--------------------- 231

  Fly   349 GTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSF 413
                         |.|:.|        .|||...|...|:|....:|||:|.||.:|||:|||||
 Worm   232 -------------TSLTNT--------GEYSCARVVLRLRREYSYYLIQLYIPCIMLVVVSWVSF 275

  Fly   414 WLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYY 478
            ||:::|...|||||:||:||||.......:.||.|||..|:|.::.:...|||..:|::|||:||
 Worm   276 WLDKDAVPARVSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYY 340

  Fly   479 TKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSR 543
                 |...|:.:|...::                        .:..|......||.||.:...|
 Worm   341 -----GRKEFLRKEKKKKT------------------------RIDDCVCPSDRPPLRLDLSAYR 376

  Fly   544 NRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQA 608
                        |:|.|.:.                                             
 Worm   377 ------------SVKRLPII--------------------------------------------- 384

  Fly   609 ARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSR 673
                      :|:|......::..|            ::|..||:.|||.|....:||:..|:.:
 Worm   385 ----------KRISEILSTNIDISR------------RVDLMSRLTFPLTFFSFLIFYYVAYVKQ 427

  Fly   674 S 674
            |
 Worm   428 S 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 75/236 (32%)
LIC 111..670 CDD:273305 152/580 (26%)
Neur_chan_memb 398..667 CDD:280999 64/268 (24%)
avr-14NP_001020963.1 LIC 20..424 CDD:273305 152/580 (26%)
Neur_chan_LBD 27..253 CDD:280998 84/301 (28%)
Neur_chan_memb 260..>355 CDD:280999 44/123 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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