DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabra6

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_036012221.1 Gene:Gabra6 / 14399 MGIID:95618 Length:459 Species:Mus musculus


Alignment Length:487 Identity:176/487 - (36%)
Similarity:258/487 - (52%) Gaps:108/487 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 NISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAFE 172
            |:|.:|||||.||||.:||.|||....::.||.|.|.||:|:|:|.|:||.:|||:|.|:||.|:
Mouse    31 NVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFK 95

  Fly   173 GAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNL 237
            |..:.|:|:..|:::||.|||:|.|||:|..|.:|||||..|:.|||.:||:.||||.|.|||.|
Mouse    96 GPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRL 160

  Fly   238 ADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAI---AEDMKLSQFDLVDCPAGNLTDIVYK 299
            .:||||...|||||||:.|..:::||.| |:.|..::   .|...|.|:||:             
Mouse   161 VNFPMDGHACPLKFGSYAYPKTEIIYTW-KKGPLYSVEVPEESSSLLQYDLI------------- 211

  Fly   300 AAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGL 364
                                        |....::.::                      |.|| 
Mouse   212 ----------------------------GQTVSSETIK----------------------SNTG- 225

  Fly   365 SGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGIT 429
                        ||.::.|.|||||.||.|:||:|.||.:.|:||.||||:|:|:...|...|||
Mouse   226 ------------EYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGIT 278

  Fly   430 TVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFIIEELD 494
            ||||||.|.:.||..||||||.||:|:|:.:.|.|:|:.:::||.|:|:|...|       ::.:
Mouse   279 TVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQS-------QKAE 336

  Fly   495 SESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKL 559
            .::..:.|.|:...  .::||...|::      ::.||...|......|.||.|.||.       
Mouse   337 RQAQTAATPPVAKS--KASESLQAEIV------VTAPPQKRRRRRRRRRRRRRRRRRR------- 386

  Fly   560 LGLFDWRRRRKPPRADSDEDEDDEQTQLRANE 591
                  ||||:..:.:.:|:|::|:.:....|
Mouse   387 ------RRRRRRRKKEEEEEEEEEEEEEEEEE 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 92/218 (42%)
LIC 111..670 CDD:273305 174/484 (36%)
Neur_chan_memb 398..667 CDD:280999 66/194 (34%)
Gabra6XP_036012221.1 LGIC_ECD_GABAAR_A6 42..239 CDD:349840 97/273 (36%)
LGIC_TM_GABAAR_alpha 242..337 CDD:349854 47/101 (47%)
TM1 helix 245..265 CDD:349854 12/19 (63%)
TM2 helix 274..295 CDD:349854 12/20 (60%)
TM3 helix 305..327 CDD:349854 7/21 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3055
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2083
Isobase 1 0.950 - 0 Normalized mean entropy S4372
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105663
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.910

Return to query results.
Submit another query.