Sequence 1: | NP_524131.1 | Gene: | Grd / 39984 | FlyBaseID: | FBgn0001134 | Length: | 686 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_036012221.1 | Gene: | Gabra6 / 14399 | MGIID: | 95618 | Length: | 459 | Species: | Mus musculus |
Alignment Length: | 487 | Identity: | 176/487 - (36%) |
---|---|---|---|
Similarity: | 258/487 - (52%) | Gaps: | 108/487 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 108 NISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAFE 172
Fly 173 GAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNL 237
Fly 238 ADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAI---AEDMKLSQFDLVDCPAGNLTDIVYK 299
Fly 300 AAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGL 364
Fly 365 SGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGIT 429
Fly 430 TVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECYFIIEELD 494
Fly 495 SESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKL 559
Fly 560 LGLFDWRRRRKPPRADSDEDEDDEQTQLRANE 591 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Grd | NP_524131.1 | Neur_chan_LBD | 110..326 | CDD:280998 | 92/218 (42%) |
LIC | 111..670 | CDD:273305 | 174/484 (36%) | ||
Neur_chan_memb | 398..667 | CDD:280999 | 66/194 (34%) | ||
Gabra6 | XP_036012221.1 | LGIC_ECD_GABAAR_A6 | 42..239 | CDD:349840 | 97/273 (36%) |
LGIC_TM_GABAAR_alpha | 242..337 | CDD:349854 | 47/101 (47%) | ||
TM1 helix | 245..265 | CDD:349854 | 12/19 (63%) | ||
TM2 helix | 274..295 | CDD:349854 | 12/20 (60%) | ||
TM3 helix | 305..327 | CDD:349854 | 7/21 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 199 | 1.000 | Domainoid score | I3055 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 373 | 1.000 | Inparanoid score | I2083 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S4372 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1057372at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_105663 | |
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X127 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 7.910 |