DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabra4

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001345970.1 Gene:Gabra4 / 14397 MGIID:95616 Length:578 Species:Mus musculus


Alignment Length:652 Identity:204/652 - (31%)
Similarity:278/652 - (42%) Gaps:212/652 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 NISELLDNLLRGYDNSIRPDFG--------------------------GPPATIEVDIMVRSMGP 146
            |.:.:||:||.||||.:||.||                          ||...::.||.|.|.||
Mouse    47 NFTRILDSLLDGYDNRLRPGFGGTDCFKTCKCALSVRLWSACLFVEILGPVTEVKTDIYVTSFGP 111

  Fly   147 ISEVDMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNK 211
            :|:|:|.|:||.:|||:|:||||.::|..:.|.|:..|:.::|.|||:|.|||:|..|.:|.|||
Mouse   112 VSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNK 176

  Fly   212 FVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNK--ERPPVAI 274
            ..||.:||.:||:.||||.|.|||.|.|||||...|||||||:.|..|::||.|.|  |:.....
Mouse   177 LFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVP 241

  Fly   275 AEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGT 339
            .|...|.|:||:                                         |....::.::  
Mouse   242 KESSSLVQYDLI-----------------------------------------GQTVSSETIK-- 263

  Fly   340 GLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCL 404
                                |.||             ||.::.|.|||:|.||.|:||.|.||.:
Mouse   264 --------------------SITG-------------EYIVMTVYFHLRRKMGYFMIQTYIPCIM 295

  Fly   405 LVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATI 469
            .|:||.||||:|:|:...|...|||||||||.|.:.||..||||||.||:|:|:.:.|.|:|:.:
Mouse   296 TVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSAL 360

  Fly   470 LQFAVVHYYTKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPP- 533
            ::||.|:|:|            .:..:..:.:                          ||.||| 
Mouse   361 IEFAAVNYFT------------NIQMQKAKKK--------------------------ISKPPPE 387

  Fly   534 -PTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDED------------------ 579
             |....:............|...:|         |:|......|:.|                  
Mouse   388 VPAAPVLKEKHTETSLQNTHANLNM---------RKRTNALVHSESDVKSRTEVGNHSSKTSAVQ 443

  Fly   580 EDDEQTQ-----------LRANEAPTTSAAAAAAQAAAQAARISP-PTGGRRRMSYYRREEMEA- 631
            |..|.|.           .|||.|.|.||||....:||     || |.|..|..|........| 
Mouse   444 ESSEATPKAHLASSPNPFSRANAAETMSAAARGLSSAA-----SPSPHGTLRPASLGSASTRPAF 503

  Fly   632 -RRKG--KRT--------------------PQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSR 673
             .|.|  |.|                    |..:..||||:.:||:||:.|...|:.||..|||:
Mouse   504 GSRLGRIKTTVNTTGAAGNVSATPPPPAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLSK 568

  Fly   674 SS 675
            .:
Mouse   569 DT 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 91/243 (37%)
LIC 111..670 CDD:273305 200/642 (31%)
Neur_chan_memb 398..667 CDD:280999 91/324 (28%)
Gabra4NP_001345970.1 Neur_chan_LBD 13..565 CDD:332142 201/645 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3055
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2083
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105663
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.960

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