DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Gabra1

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_006532258.1 Gene:Gabra1 / 14394 MGIID:95613 Length:553 Species:Mus musculus


Alignment Length:678 Identity:213/678 - (31%)
Similarity:313/678 - (46%) Gaps:178/678 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DASTDLIAARSLSSHQGQRSNLRIFKLLISCCLLMLCIYPNAWPWSIGPGSGPFSVSADSIKGRG 79
            ||| |.::.|...:...:|:..|....|....:|...::...|...: |..||........|.||
Mouse    42 DAS-DRVSERGARTPSARRARARRLAQLRLTAILSPTLFSRVWSDPV-PRGGPELCKPVMKKSRG 104

  Fly    80 DTHRLGEMGTSLSSSLPSSWLTQS-----NNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDI 139
            .:..|......||:....|:...|     :|....:.:||.||.||||.:||..|.....::.||
Mouse   105 LSDYLWAWTLILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDI 169

  Fly   140 MVRSMGPISEVDMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLH 204
            .|.|.||:|:.||.|::|.:|||||.|:||.|:|....|.|:..|.::||.|||:|:|||:|..|
Mouse   170 FVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAH 234

  Fly   205 TITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKE- 268
            .:|.|||.:||.::|.:||:.|||::|.|||:|.|||||...|||||||:.||.::|:|.|.:| 
Mouse   235 NMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREP 299

  Fly   269 RPPVAIAED-MKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAK 332
            ...|.:||| .:|:|:||:                                              
Mouse   300 ARSVVVAEDGSRLNQYDLL---------------------------------------------- 318

  Fly   333 NQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQ 397
                   |..:|.|..          .|:||             ||.::..:|||:|.:|.|:||
Mouse   319 -------GQTVDSGIV----------QSSTG-------------EYVVMTTHFHLKRKIGYFVIQ 353

  Fly   398 VYGPCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSF 462
            .|.||.:.|:||.||||||||:...|...|:|||||||.|.:.||..||||:|.||:|:|:.:.:
Mouse   354 TYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCY 418

  Fly   463 GFIFATILQFAVVHYYTKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCA 527
            .|:|:.:::||.|:|:||.|.           :..|:|                           
Mouse   419 AFVFSALIEFATVNYFTKRGY-----------AWDGKS--------------------------- 445

  Fly   528 ISMPPPPTRLGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEA 592
             .:|..|.::       :.|..:::..::               |.|.|              ..
Mouse   446 -VVPEKPKKV-------KDPLIKKNNTYA---------------PTATS--------------YT 473

  Fly   593 PTTSAAAAAAQAAAQAARISPPTGGRRRMSYYRREEMEARRK---GKRTPQYNSVSKIDRASRIV 654
            |..:.........|::|.|.|             :|::...|   .|:|  :||||||||.|||.
Mouse   474 PNLARGDPGLATIAKSATIEP-------------KEVKPETKPPEPKKT--FNSVSKIDRLSRIA 523

  Fly   655 FPLLFILINVFYWYGYLSRSSRILANTP 682
            |||||.:.|:.||..||:|..::.|.||
Mouse   524 FPLLFGIFNLVYWATYLNREPQLKAPTP 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 89/217 (41%)
LIC 111..670 CDD:273305 185/563 (33%)
Neur_chan_memb 398..667 CDD:280999 78/271 (29%)
Gabra1XP_006532258.1 LIC 105..539 CDD:273305 191/599 (32%)
LGIC_ECD_GABAAR_A1 153..346 CDD:349835 92/268 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3055
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2083
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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