DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grd and Glra3

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_536686.3 Gene:Glra3 / 110304 MGIID:95749 Length:464 Species:Mus musculus


Alignment Length:589 Identity:179/589 - (30%)
Similarity:253/589 - (42%) Gaps:171/589 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 EMGTSLSSSLPSSWLTQSNNHANISELLDNLL---RGYDNSIRPDFGGPPATIEVDIMVRSMGPI 147
            |..::.|.|.|.|          .|:.||.|:   .|||..|||:|.|||..:..:|.:.|.|.|
Mouse    30 ETNSARSRSAPMS----------PSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSI 84

  Fly   148 SEVDMTYSMDCYFRQSWVDKRLAF-EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNK 211
            :|..|.|.::.:.||.|.|.|||: |...|:|.|..|||..|||||.:|.|.|.:..|.:||.||
Mouse    85 AETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNK 149

  Fly   212 FVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAE 276
            .:||::||.||||.|||:...|||:|.:||||:|.|.::..|||||.:|:|:.|..| .||.:||
Mouse   150 LLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDE-APVQVAE 213

  Fly   277 DMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGL 341
            .:.|.||.|.:                        .||                          |
Mouse   214 GLTLPQFLLKE------------------------EKD--------------------------L 228

  Fly   342 KLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLV 406
            :.....:.||:                         ::.:.|.|||:|.||.:|||:|.|..|:|
Mouse   229 RYCTKHYNTGK-------------------------FTCIEVRFHLERQMGYYLIQMYIPSLLIV 268

  Fly   407 VLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQ 471
            :|||||||:|.:|...||:||||||||||.....:|..||||||..|:|.::.:...|:|:.:|:
Mouse   269 ILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLE 333

  Fly   472 FAVVHYYTKYGSGECYFIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTR 536
            :|.|::.::..        :||                                           
Mouse   334 YAAVNFVSRQH--------KEL------------------------------------------- 347

  Fly   537 LGMLTSRNRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAA 601
                 .|.||.|..:...::::....|              .|.|||..:.|      .|..|..
Mouse   348 -----LRFRRKRKNKTEAFALEKFYRF--------------SDTDDEVRESR------FSFTAYG 387

  Fly   602 AQAAAQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFY 666
            .....||.....|.|....:....:...|.|:     ...:...|||..||..|||.|::.|:||
Mouse   388 MGPCLQAKDGVVPKGPNHAVQVMPKSPDEMRK-----VFIDRAKKIDTISRACFPLAFLIFNIFY 447

  Fly   667 WYGY 670
            |..|
Mouse   448 WVIY 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 88/219 (40%)
LIC 111..670 CDD:273305 172/562 (31%)
Neur_chan_memb 398..667 CDD:280999 70/268 (26%)
Glra3NP_536686.3 LIC 12..451 CDD:273305 178/587 (30%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O75311 235..240 2/29 (7%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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