DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grd and gabra6

DIOPT Version :9

Sequence 1:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster
Sequence 2:XP_031754593.1 Gene:gabra6 / 100488862 XenbaseID:XB-GENE-6049732 Length:455 Species:Xenopus tropicalis


Alignment Length:590 Identity:196/590 - (33%)
Similarity:274/590 - (46%) Gaps:177/590 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 LTQSNNHA-NISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQS 163
            :|.:|.|: ||:.:||.||.||||.:||.||||...::.||.|.|.||:|:|||.|:||.:|||:
 Frog    22 ITAANLHSENITRILDRLLDGYDNRLRPSFGGPVTEVKTDIYVTSFGPVSDVDMEYTMDIFFRQT 86

  Fly   164 WVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLT 228
            |||:||.|:|..:.|.|:..|:::||.|||:|.|||:|..|.:|||||..||.|||.|||:.|||
 Frog    87 WVDERLKFDGPTEILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTVLYTMRLT 151

  Fly   229 IKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNK------ERPPVAIAEDMKLSQFDLVD 287
            |||.|||.|.:||||...|||||||:.|..|:::|.|.|      |.|    .|...|.|:||| 
 Frog   152 IKAECPMRLMNFPMDGHACPLKFGSYAYPKSEIVYTWKKGPLYSVEVP----EESSSLLQYDLV- 211

  Fly   288 CPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGR 352
                                                                |.|:         
 Frog   212 ----------------------------------------------------GQKV--------- 215

  Fly   353 DATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNR 417
                  .|.|.||.|        .|||:.:|.|.|||.:|.::|..|.||.:.||||.|.||:|:
 Frog   216 ------SSETLLSNT--------GEYSLQVVMFFLQRKIGYYIIHTYIPCSMTVVLSQVVFWINK 266

  Fly   418 EATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYG 482
            |:...|...|||||||||.|.:.||...|||||.||:|:|:.:.|.|:|:.:::||.|:|:|...
 Frog   267 ESVPARTVAGITTVLTMTTLSISARHSFPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQ 331

  Fly   483 SGECYFIIEE---LDSESGESETEPLT-SDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSR 543
            ..:......:   |.:.:..:|.|.:| ||               |.|.:.     .|:..:.|:
 Frog   332 IQKTMMKAAKKAALAAATARAENEFVTLSD---------------SNCNLK-----KRINSVASQ 376

  Fly   544 NRRPRNRRHGLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANE---APTTSAAAAAAQAA 605
            ..:.......|:                     ::...:|||.:...:   :.|||:        
 Frog   377 GNQSTEGDLPLY---------------------EDSPYNEQTDIPTRDHMLSDTTSS-------- 412

  Fly   606 AQAARISPPTGGRRRMSYYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGY 670
                                              |:...||||:.:||:|||.|...|:.||..|
 Frog   413 ----------------------------------QHTGTSKIDKYARILFPLSFAGFNLVYWVVY 443

  Fly   671 LSRSS 675
            ||:.:
 Frog   444 LSKDT 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 98/221 (44%)
LIC 111..670 CDD:273305 188/571 (33%)
Neur_chan_memb 398..667 CDD:280999 71/275 (26%)
gabra6XP_031754593.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 203 1.000 Domainoid score I2891
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2061
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.070

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