DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and GLR1.3

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_199652.1 Gene:GLR1.3 / 834896 AraportID:AT5G48410 Length:860 Species:Arabidopsis thaliana


Alignment Length:573 Identity:107/573 - (18%)
Similarity:186/573 - (32%) Gaps:213/573 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 LTQLFEGANL---------SLNADVTYVSREDEERFILHDVYNK--------GSHLGGKLNITVD 162
            |:..||..|:         .||::.::.:|..     |...:||        ||....|....:|
plant   375 LSNKFEIINMIGSSERRVGFLNSNGSFSNRRH-----LSSTHNKLETIIWPGGSAQSPKGTSLID 434

  Fly   163 QTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAA--------LVSVLPINSSEEELLEF 219
            ...:      :::..::..:..|||. :::...||..|..        ..|:.|.| .|.|.:.:
plant   435 SDRK------KLRVLVTSSNRFPRLM-KVETDPVTNELIVEGFCIEVFRASISPFN-YEVEYIPW 491

  Fly   220 LNSDRDSHMDSISRIGNRLIMHTQEILGFKLHYIWCGTWSVQDAFGGAIGMLTNESAELCTTPFV 284
            ||.   |:.|:               |.:.||       |.:|.:..|:|.:|..|         
plant   492 LNG---SNYDN---------------LAYALH-------SQKDKYDAAVGDITITS--------- 522

  Fly   285 PSWNRLHYLH---PMTEQAQFRAVCMFRTPHNAGIKAA------VFLEPFMPSVWFAFAGLLIFA 340
               ||..|:.   |.||.             ..||.|.      ||.:|..|.:|...|...:..
plant   523 ---NRSTYVDFTLPFTEM-------------GLGIVAVKERSMWVFFQPLTPDLWITSAFFFVLT 571

  Fly   341 GVLLWMIFHLER-----HWMQRCLDFIPSLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLT 400
            ||::|:|...|.     .|.|:.         ..::.||.:.:  .|...:.....|:...|.:.
plant   572 GVIVWLIERAENKEFQGSWPQQI---------GVVLWFGFSTL--VYAHREKLKHNLSRFVVTVW 625

  Fly   401 SF---LMYNYYTSIVVSTLLGSPVR-----------------------SNIRTIQQLA-DSSLD- 437
            .|   ::...||:.:.|.:....:|                       |::|.::.|. :|:.| 
plant   626 VFAVLILTASYTATLTSMMTVQQIRFNSNEDYVGHLSGSLIANVALTSSSLRAMRSLGLNSAADY 690

  Fly   438 --------VGF--DTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQPGF 492
                    |.|  |.:|:.|..|..:|    ...:..|.:|..:                   ||
plant   691 AQALLNKTVSFVVDELPYLKVVLGENP----THFFMVKTQSTTN-------------------GF 732

  Fly   493 VYTSEASFMYHFVEKHYLP---REISDLNEIILRPESAVYGMVHLNSTYRQLLTQLQVRMLETGI 554
            .:..:..|       ..:|   ||||.|..                   .:.|.:::.|..:..:
plant   733 GFMFQKGF-------ELVPNVSREISKLRT-------------------SEKLNEMEKRWFDNQL 771

  Fly   555 TSKQSRFFSKTKLHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICW 607
            ........:...|:.|...|:| :|:.:|..|.:         |:||.|...|
plant   772 PYTTDDTSNPITLYRFRGLFII-IGVSFAFALAV---------LVILCLRDKW 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 44/270 (16%)
GLR1.3NP_199652.1 PBP1_GABAb_receptor 43..405 CDD:107361 6/29 (21%)
ANF_receptor 57..385 CDD:279440 4/9 (44%)
GluR_Plant 438..767 CDD:270404 81/446 (18%)
Lig_chan 559..798 CDD:278489 49/299 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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