DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and GLR3.6

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:600 Identity:110/600 - (18%)
Similarity:189/600 - (31%) Gaps:217/600 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LYRLIVFNLLEINLSNLMVFHCW----------SIKEAFPLVEMLNQNGIFSQYIDVQNPDNLAN 60
            ::.|.:||:.. ||..:...:.|          ......||..:.|..|:.:  :.:..|:::..
plant   230 IWGLELFNVAR-NLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQGVIT--LRLHTPNSIMK 291

  Fly    61 VHKEYLDSDLVRLGVFLDLGCDKAELVTNQSSRARLYNQNLHWLLYDEAGNFTKLTQLFEGANLS 125
            .:......:|..:|:                |...||..:..|||.....:|.|     :|.|:|
plant   292 QNFVQRWHNLTHVGL----------------STYALYAYDTVWLLAQAIDDFFK-----KGGNVS 335

  Fly   126 LNADVTYVSREDEERFILHDVYNKGSHL-------GGKLNITVDQTLQCNRSHCQVKEYLSELHL 183
            .:.:.           |:.::.....||       |||  |.::..||.:|           :.|
plant   336 FSKNP-----------IISELGGGNLHLDALKVFDGGK--IFLESILQVDR-----------IGL 376

  Fly   184 RPRLQHRMDLSSVTFRLAAL------------------VSVLPINSSEEELLE------------ 218
            ..|::...|.:.|......|                  :||:|.:..|.....            
plant   377 TGRMKFTSDRNLVNPAFDVLNVIGTGYTTIGYWFNHSGLSVMPADEMENTSFSGQKLHSVVWPGH 441

  Fly   219 ---------FLNSDRDSHMDSISRIG--NRLIMHTQEILGFKLHYIWCGTWSVQDAFGGAIGMLT 272
                     |.|:.|  |:    |||  ||  ...:|::..|.:                 ||:|
plant   442 SIKIPRGWVFSNNGR--HL----RIGVPNR--YRFEEVVSVKSN-----------------GMIT 481

  Fly   273 NESAELCTTPFVPSWNRLHYLHP------------------------------------MTEQAQ 301
            .    .|...|:.:.|.|.|..|                                    :||:.:
plant   482 G----FCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGVYDAGVGDITIITERTK 542

  Fly   302 FRAVCMFRTPH------------NAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLE--- 351
               :..|..|:            ..|..|..||.||.|.:|...|...:..|.::|.:.|..   
plant   543 ---MADFTQPYVESGLVVVAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLEHKHNDE 604

  Fly   352 -RHWMQRCLDFIPSLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVST 415
             |...:|      .::::...||.............:. ||:..|..:....::.:.||:.:.|.
plant   605 FRGPPRR------QVITTFWFSFSTLFFSHRETTTSNL-GRIVLIIWLFVVLIINSSYTASLTSI 662

  Fly   416 L----LGSPVRSNIRTIQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVW 476
            |    |.||:: .|.|:|...|   .:|:....|.:.||:......:..|...:           
plant   663 LTVHQLSSPIK-GIETLQTNHD---PIGYPQGSFVRDYLIHELNIHVSRLVPLR----------- 712

  Fly   477 LSPEEGVIRVRDQPG 491
             ||||....:||.||
plant   713 -SPEEYDKALRDGPG 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 35/171 (20%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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