DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and GLR1.4

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_187408.2 Gene:GLR1.4 / 819940 AraportID:AT3G07520 Length:861 Species:Arabidopsis thaliana


Alignment Length:591 Identity:107/591 - (18%)
Similarity:209/591 - (35%) Gaps:169/591 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 KAELVTNQSSRARLYNQNLHWLLYDEAGNFTKLTQLF---------EGA-NLSLNADVTYVSRE- 136
            :.|.|..:.|...::..::.|.| ..|....||..|.         |.| :..|:.|:.::.:: 
plant   316 RLEEVVTRMSVCSIWAHDIAWSL-ARAAEVAKLPGLSVYDLLEAIPESAKHKGLSGDIKFIDKKF 379

  Fly   137 DEERFILHDVYNKGSHLGGKLNITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTF--- 198
            ..::|.:.::..:|....|..|   ..:...||              |.||.....|.::.:   
plant   380 ISDKFEIVNMIGRGERSVGLWN---SGSFISNR--------------RRRLSSTKALETIIWPGG 427

  Fly   199 --RLAALVS--------------VLPINSSEEELLEFLNSDRDSHMDSISRIGNRLIMHTQEILG 247
              |:..:.|              ::|..:...::|| :.:|..:.:.:.:  |..:.:....||.
plant   428 STRIPKIRSLKEKRHGKKKKLRVLVPAGNITPQILE-VKTDFKTGVTAAT--GYCIDVFETSILP 489

  Fly   248 F--KLHYI-WCGT-------------WSVQDAFGGAIGMLTNESAELCTTPFVPSWNRLHYLH-- 294
            |  ::.|| |.|.             :|.:|.:..|:|.:|...            ||..|:.  
plant   490 FNYEVEYIPWPGAINYKNYNDLVYTLYSQKDKYDAAVGDITITD------------NRSLYVDFT 542

  Fly   295 -PMTEQAQFRAVCMFRTPHNAGIKAA-----VFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERH 353
             |.|:...            |.:.|.     :..:|...|:|...|...|..|.::|:|   |||
plant   543 LPFTDMGL------------AVVTAKDKSMWIIFKPLTLSLWLTIASFFILTGAIVWLI---ERH 592

  Fly   354 ----WMQRCLDFIPSLLS---SCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSI 411
                :...|...|.:||.   |.|:......:|.:.       .|...|..:....::.:.||:.
plant   593 DNADFQGSCFQQIGTLLCFGFSTLVFAHRERLQHNM-------SRFVVIVWIFAVLILTSNYTAT 650

  Fly   412 VVSTLLGSPVRSNIRTIQQL--ADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNS 474
            :.|          :.|:||:  ..|:.::||.:.......:..:|     :....:.:..:..:.
plant   651 LTS----------VMTVQQIRGLKSNENIGFFSASIAANVVNDNP-----TFQGPRYKGLKTADD 700

  Fly   475 VWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYLPREISDLNEIILRPESAVYG--------- 530
            ...:...|.|      .|: ..|..::..||.||  |.|.     :|:..||...|         
plant   701 FTNALRNGTI------SFI-VDEVPYVKLFVAKH--PSEF-----VIVETESVTNGFGFAFQKGS 751

  Fly   531 --MVHLNSTYRQLLTQLQVRMLE--------TGITSKQSRFFSKTKLHTFSNSFVIQVGMEYAAP 585
              :..::....:|....:::.:|        |..||:.:  |....::||...|:| .|:.:|..
plant   752 PLVQKVSREIEKLRRTEKLKAIENWWFQRQTTSATSEDT--FHPLTVYTFRGLFMI-TGVSFAFA 813

  Fly   586 LFISLL 591
            |.:.|:
plant   814 LIVYLI 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 45/252 (18%)
GLR1.4NP_187408.2 PBP1_GABAb_receptor 47..410 CDD:107361 19/111 (17%)
ANF_receptor 64..390 CDD:279440 14/74 (19%)
GluR_Plant 448..778 CDD:270404 70/395 (18%)
Periplasmic_Binding_Protein_Type_2 476..>657 CDD:304360 43/226 (19%)
Lig_chan 570..810 CDD:278489 54/281 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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