DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and GLR3.5

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001324013.1 Gene:GLR3.5 / 817800 AraportID:AT2G32390 Length:953 Species:Arabidopsis thaliana


Alignment Length:617 Identity:100/617 - (16%)
Similarity:192/617 - (31%) Gaps:208/617 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 TNQS----SRARLYNQNLHWLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHDVYN 148
            ||.|    |:..::|:...:|......|:|.||     ..:..|::...::.       .:|:.|
plant   370 TNDSGIKLSKLHIFNEGERFLQVILEMNYTGLT-----GQIEFNSEKNRINP-------AYDILN 422

  Fly   149 KGS-----------HLGGKLNITVDQTLQCNRSHCQVKEY-LSEL-------------------- 181
            ..|           |.|  .::...:||....|:...|:. |:|:                    
plant   423 IKSTGPLRVGYWSNHTG--FSVAPPETLYSKPSNTSAKDQRLNEIIWPGEVIKPPRGWVFPENGK 485

  Fly   182 HLRPRLQHRMDLSSVTFR--------------LAALVSVLPINSSEEELLEFLNSDRDSHMDSIS 232
            .|:..:.:|:...:...:              ..|.:.:||.......:|........|:.:.||
plant   486 PLKIGVPNRVSYKNYASKDKNPLGVKGFCIDIFEAAIQLLPYPVPRTYILYGDGKKNPSYDNLIS 550

  Fly   233 RIGNRLIMHTQEILGFKLHYIWCGTWSVQDAFGGAIGMLTNESAEL-CTTPFVPSWNRLHYLHPM 296
            .:...:.                      |...|.:.::||.:..: .|.||:.|  .|..:.|:
plant   551 EVAANIF----------------------DVAVGDVTIITNRTKFVDFTQPFIES--GLVVVAPV 591

  Fly   297 TEQAQFRAVCMFRTPHNAGIKAA--VFLEPFMPSVWFAFAGLLIFAGVLLWMIFH---------- 349
                             .|.|::  .||:||...:|.....|.:|.|.::|::.|          
plant   592 -----------------KGAKSSPWSFLKPFTIEMWAVTGALFLFVGAVIWILEHRFNEEFRGPP 639

  Fly   350 ----LERHWMQRCLDFIPSLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTS 410
                :...|..         .|:...|.....:        |..||...:..:....::.:.||:
plant   640 RRQIITVFWFS---------FSTMFFSHRENTV--------STLGRFVLLVWLFVVLIINSSYTA 687

  Fly   411 IVVSTLLGSPVRSNIRTIQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSV 475
            .:.|.|....:.|.|..:..|..|:..:|.....|...:||                     |.:
plant   688 SLTSILTVQQLTSRIEGMDTLIASNEPIGVQDGTFAWKFLV---------------------NEL 731

  Fly   476 WLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYL------PRE------ISDLNEI--ILRPES 526
            .::|.. :|.::|                 |:.||      ||.      :.:|..|  :|...:
plant   732 NIAPSR-IIPLKD-----------------EEEYLSALQRGPRGGGVAAIVDELPYIKALLSNSN 778

  Fly   527 AVYGMVHLNSTY----------RQLLTQLQVRMLETGITSKQSRFFSK--TKLH----TFSNSFV 575
            ..:..|....|.          ..|...:...:|:.....|..:...|  |..|    ..|::..
plant   779 CKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHECTMQISDTEN 843

  Fly   576 IQVGMEYAAPLFISLLVAYFLALLILILEICW 607
            .|:.::....||:...|.:|:||.:...::.|
plant   844 YQISVQSFWGLFLICGVVWFIALTLFCWKVFW 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 40/262 (15%)
GLR3.5NP_001324013.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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