DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and grik5

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:549 Identity:110/549 - (20%)
Similarity:204/549 - (37%) Gaps:118/549 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 NFTKLTQLFEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGGKLNITV---DQTLQCNRS-- 170
            |:.::.: ::|    |...|.:.|:.....:.|| :..|  |.||...|.:   :.||..|.:  
Zfish   361 NYLRMVE-YDG----LTGRVEFNSKGQRTNYTLH-ILEK--HRGGHKEIGIWYSNNTLLMNSTSL 417

  Fly   171 HCQVKEYLSELHLRPRLQHRMDLSSVTFRLAALVSVLPINSSEEELLEFLNSDRDSHMDSISRIG 235
            ...|.|.|:...|           .:|..|.....:..||..|.|                   |
Zfish   418 DINVSETLANKSL-----------IITTILENPYVMRKINYQEFE-------------------G 452

  Fly   236 NR--------LIMHTQEILGF--KLHYIWCGTWSVQDAFG---GAIGMLTNESAELCTTPFVPSW 287
            |.        ::....:||.|  ::..:..|.:...:..|   |.:|.|.|..|:|....|    
Zfish   453 NEQYEGFCVDMLRELSDILKFTYRIKLVDDGLYGAPEPNGSWTGMVGELINRKADLAVAAF---- 513

  Fly   288 NRLHYLHPMTEQAQFRAVCMFRTPH-----------NAGIKAAV--FLEPFMPSVWFAFAGLLIF 339
                     |..::...|..|..|.           :.|.|...  ||:||.|:||.......:.
Zfish   514 ---------TITSEREKVIDFSKPFMTLGISILYRVHIGRKPGYFSFLDPFSPAVWLFMLLAYLA 569

  Fly   340 AGVLLWMIFHLERH-WM--QRCL----DFIP---SLLSSCLISFGAACIQGSYLMPKSAGGRL-- 392
            ...:|::...|..: |.  ..||    |.:.   :|.:|.....|....|||.:||::...|.  
Zfish   570 VSCVLFLSARLSPYEWYNPHPCLRERRDLLENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVS 634

  Fly   393 ----AFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLDVGFDTV--PFTKTYLV 451
                ||..::::|      ||:.:.:.|....:...|.:...|||.: ::.:.|:  ..|.|:.:
Zfish   635 GVWWAFTLIIISS------YTANLAAFLTVQRMEVPIESPDDLADQT-NIQYGTIHGGSTMTFFM 692

  Fly   452 SSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYLPREISD 516
            :|.....:.::....  .:.|:....|.|||:.|       |..|:.:|:.......|......:
Zfish   693 NSRYQTYQRMWNYMY--SKQPSVFVKSTEEGIAR-------VVNSKYAFLLESTMNEYHRSLNCN 748

  Fly   517 LNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETG-ITSKQSRFFSKTKLHTFSNSFVIQVG 579
            |.:|....::..||: :.|.|.:|..|:...:::.|.. :...:.|::...|.....:.....:|
Zfish   749 LTQIGGLLDTKGYGIGMPLGSPFRDELSLAVLQLQENNRLEILKRRWWEGGKCPKEEDHRAKGLG 813

  Fly   580 MEYAAPLFISLLVAYFLALLILILEICWA 608
            ||....:|:.|:....:|:.:.::|..|:
Zfish   814 MENIGGIFVVLICGLIIAVFVAVMEFVWS 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 50/243 (21%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389 14/58 (24%)
ANF_receptor 55..392 CDD:279440 7/36 (19%)
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141 5/26 (19%)
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 83/428 (19%)
Lig_chan 558..828 CDD:278489 57/285 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591255
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.