DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and gria1a

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:420 Identity:88/420 - (20%)
Similarity:155/420 - (36%) Gaps:84/420 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 HYIW----CGTWSVQDA----FGGAIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVCM 307
            |||.    .|.:..:||    :.|.:|.|....|::...|...:..|...:.............|
Zfish   451 HYILKIVADGKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIM 515

  Fly   308 FRTPHNAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERH-W-MQRCLDFI------PS 364
            .:.|..:......||:|....:|.......|...|:|:::.....: | ...|.|..      ||
Zfish   516 IKKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHADDCEDGAEENPNQPS 580

  Fly   365 -------------------------LLSSCLISFGAACIQGSYLMPKSAGGRLA-----FIAVML 399
                                     :.:|...|.||...||..:.|:|..||:.     |..:::
Zfish   581 SSSAQPGQNQQNQNQQSQEQTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 645

  Fly   400 TSFLMYNYYTSIVVSTLLGSPVRS--NIRTIQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLY 462
            .|....|....:.|..:: ||:.|  ::....::|..:||.|     .||.:...|.......::
Zfish   646 ISSYTANLAAFLTVERMV-SPIESAEDLAKQTEIAYGTLDAG-----STKEFFRRSKIAVFEKMW 704

  Fly   463 KQKVESKRDPNSVWLSPEEGVIRVRDQPG-FVYTSEASFMYHFVEKHYLPREISDLNEIILRPES 526
            ...  ...||:....:.:|||:|||...| :.|..| |.|..::|:    |:..|..::....:|
Zfish   705 SYM--KSADPSVFVKTTDEGVMRVRKSKGKYAYLLE-STMNEYIEQ----RKPCDTMKVGGNLDS 762

  Fly   527 AVYGM-VHLNSTYRQLLTQLQVRMLETGITSK-QSRFF------------SKTKLHTFSNSFVIQ 577
            ..||: ....|..|..:....:::.|.|:..| :::::            ||.|....|.|.|  
Zfish   763 KGYGIATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNV-- 825

  Fly   578 VGMEYAAPLFISLLVAYFLALLILILEICW 607
                  |.:|..|:....||:|:.::|.|:
Zfish   826 ------AGVFYILIGGLGLAMLVALVEFCY 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 55/266 (21%)
gria1aNP_991161.1 Periplasmic_Binding_Protein_Type_1 26..387 CDD:299141
ANF_receptor 36..369 CDD:279440
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 74/367 (20%)
Lig_chan 536..836 CDD:278489 66/320 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591199
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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