DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grin3ba

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:651 Identity:138/651 - (21%)
Similarity:220/651 - (33%) Gaps:178/651 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PD-----NLANVHKEYLDSDLVRLGVFLDLGCDKAELVTNQS--------------SRARLYNQN 100
            ||     |:.|...:....:|...|.:|      |..::|.|              ||. |.:|.
Zfish   335 PDLALIQNMVNCFDKPNKHELPSSGQYL------ARFLSNTSFTGLTGPVRVERSFSRV-LTSQR 392

  Fly   101 LH-WLLY-DEAGNFTKLT-QLFEGANLSLNAD-----VTYVSREDEERFILHDVYNKGSHL-GGK 156
            .| |.|. |..|..:.:| ..::...|.|...     ||...|||.....|...:..|..: |.:
Zfish   393 FHIWSLQRDPLGQPSWVTVASWQSGRLELEEQGLWPGVTQHQREDGPGIRLGGRWQAGLPVAGSR 457

  Fly   157 LNIT------------VDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAAL-VSVLP 208
            |.:.            ||:..||.         ..:|.|.|:..:...|:.:...|... .|.||
Zfish   458 LRVVTLVEHPFVFTREVDEEGQCP---------AGQLCLDPQTNNSEVLNQLFRELEQTNSSSLP 513

  Fly   209 INSSE------EELLEFLNSDRDSHMDSISRIGNRLIMHTQEILGFKLHYIW-CGTWSVQDAFGG 266
            .:..:      .:|||.|..|.....|..             |:|...:..| .|.||      |
Zfish   514 TDMRKCCYGYCIDLLEKLAEDMHFEFDLY-------------IVGDGKYGAWKGGRWS------G 559

  Fly   267 AIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVCMFRTPH---NAGI-----KAAVFLE 323
            .:|.|.:..|::..|.|            ....|:.| |..|.:|.   :.||     ..|..:.
Zfish   560 LVGDLLSGVADMAVTSF------------SINSARSR-VIDFTSPFFSTSLGILVRSKDTAAPIG 611

  Fly   324 PFM-PSVWFAFAGLLIFAGVLLWMI--------FHLERHWMQRCLDF-IPSLLSSC-LISFGAAC 377
            .|| |..|..:.|:.:...:....|        |.:..|...|...| ..|.|:.| .|.||...
Zfish   612 AFMWPLHWSMWVGIFVALHITALFITLYEWNSPFGMTPHGRNRIRVFSYSSALNLCYAILFGRTV 676

  Fly   378 IQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQ--QLADSSLDVGF 440
            ...:   ||...||.......:...|:.:.||:.:.:.::|......:..|.  :|...||...|
Zfish   677 ASKT---PKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMVGEKTFEEVSGIHDVKLHHPSLGFRF 738

  Fly   441 DTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQP----GFVYTSEASFM 501
            .||      ..||....::..:.:..|..|..|..  :..:||..::..|    .|:        
Zfish   739 GTV------RESSAEDYVKKSFPEMHEYMRRFNKP--TTPDGVSTLKTDPPQLDAFI-------- 787

  Fly   502 YHFVEKHYLPREIS---DLNEIILRPESAVYGMVHLNSTYRQLLTQLQVRMLETGITSKQSRFFS 563
               ::|..|..|:|   |...:.:....|:.|       |...|.|      .:.:|...|.:.|
Zfish   788 ---MDKALLDYEVSIDADCKLLTVGKPFAIEG-------YGIGLPQ------NSPLTRNVSEYVS 836

  Fly   564 KTK-------LH------------TFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICWAR 609
            :.|       ||            .|:.:..:|:|:::.:.||:.|.|....|||.|:.|..:.|
Zfish   837 RYKSDGYMDMLHDKWYKVVPCGKRVFAVTETLQMGIQHFSGLFVLLCVGVAGALLTLLGEHAFFR 901

  Fly   610 Y 610
            :
Zfish   902 F 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 47/243 (19%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 22/99 (22%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 95/470 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591230
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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