DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grin2aa

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:369 Identity:68/369 - (18%)
Similarity:126/369 - (34%) Gaps:98/369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 GFKLHYIWCGTWSVQDAFGGAIGMLTNESAELCTTPFVPSWNR---LHYLHPMTEQAQFRAVCMF 308
            |.|::.:|          .|.:|.:.|:.|.:.......:..|   :.:..|..|    ..:.:.
Zfish   483 GKKINNVW----------NGMVGEVVNKKAVMAVGSLTINEERSEVIDFSVPFVE----TGISVM 533

  Fly   309 RTPHNAGIKAAVFLEPFMPSVW-FAFAGLLIFAGVLLWMIFHLERHWMQRCLDFIPSLLSSCLIS 372
            .:..|..:..:.|||||..||| ..|..||:...:.::|            .::|..|      .
Zfish   534 VSRSNGTVSPSAFLEPFSASVWVMMFVMLLLVTAMAVFM------------FEYISPL------G 580

  Fly   373 FGAACIQG------SYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQL 431
            |.....||      |:.|.|         ||.|...|::|  .|:        ||::...|..:.
Zfish   581 FNRNLAQGKDPHGPSFTMGK---------AVWLLWGLVFN--NSV--------PVQNPKGTTSKF 626

  Fly   432 ADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQPGFVYTS 496
            ..|..  .|..|.|..:|..:.....|:..:..:|....|..  :.||              |:.
Zfish   627 IVSVW--AFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDKK--FQSP--------------YSY 673

  Fly   497 EASFMYHFVEKHYLPREI----SDLNEIILRPESAVYGMVHLNSTYRQLLT-QLQVRMLETGITS 556
            ...|.:..|......|.|    .|:::.:::     |....:|.....|.| :|...:.:..:.:
Zfish   674 SPPFRFGTVPNGSTERNIRKNYPDMHQYMVK-----YHQTGVNDALVSLKTGKLDAFIYDAAVLN 733

  Fly   557 KQSRFFSKTKLHTFSNSFV---------IQVGMEYAAPLFISLL 591
            ..:......||.|..:.::         :|.|..:..|:.:::|
Zfish   734 YMAGRDEGCKLVTIGSGYIFATTGYGIALQKGSLWKRPVDLAIL 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 45/236 (19%)
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..389 CDD:107373
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 68/369 (18%)
NMDAR2_C 836..1460 CDD:313729
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591193
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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