DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grid2

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:728 Identity:134/728 - (18%)
Similarity:253/728 - (34%) Gaps:221/728 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LYRLIVFN--------LLEINLSNLMVFHC-WSI------------------------KEAFPLV 37
            |.|.::|.        :.|:..:||:.|.| |.|                        ::.|||.
Zfish   227 LRRAVLFMSPATAKAFITEVVETNLVAFDCQWIIINEEISDMDVQELVMKSIGRLTLVRQTFPLP 291

  Fly    38 E------MLNQNGIFSQYIDVQNPD-NLANVHKEYL-DSDLVRLGVF------------LDLGCD 82
            :      :.|.:.|.:...|.::|. .:..:...|: |:.|:....|            ..|.|.
Zfish   292 QNTSQRCVRNNHRINTSLCDPKDPKAQMLEITNRYIYDTVLLLANTFHRKLEDRKWHSMASLSCI 356

  Fly    83 KAELVTNQSSRARLYNQNLHWLLYDEAGNFTKLTQLFE----GANLSLNADVTYVS-REDEERFI 142
            :......|..::.|...        :.|..:.||.|.|    |:|.:::.::...: .||..|.:
Zfish   357 RKGSKPWQGGKSMLETV--------KKGGVSGLTSLLEFNDNGSNPNIHFEILGTNYGEDRGRGV 413

  Fly   143 --------LHDVYNKGSHLGGKLNITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFR 199
                    :|.       |.|.|   .|:.|:.|                        :..|..|
Zfish   414 SRLATWDPIHG-------LNGTL---TDRKLENN------------------------MRGVVLR 444

  Fly   200 LAALVSVL--PINSSEEELLEFLNSDRDSHMDSISRIGNRLIMHTQEILGFKLHYIWC------- 255
               :|:||  |.....|.:|......:...:|.:..:.|        .|||| :.|:.       
Zfish   445 ---VVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALAN--------YLGFK-YEIYVAPDHKYG 497

  Fly   256 -----GTWSVQDAFGGAIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVCMFRTPHNAG 315
                 |||:      |.||.|..:.|::..:....:..|...:...|....:....:.|..... 
Zfish   498 SQQADGTWN------GLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVLLRKAERT- 555

  Fly   316 IKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERHWMQRCLDFIP-------SLLSSCLISF 373
            :.....|.||..|:|...||.::..|.|::::     :|:..  ..:|       :|.:|....:
Zfish   556 VDMFACLAPFDLSLWACIAGTVLLVGTLVYLL-----NWLNP--PRLPMGSVSSTTLYNSMWFVY 613

  Fly   374 GAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLDV 438
            |:...||..:...:...|:......|.:.::.:.||:.:.:.|..|.:.::|:::|.||..: |:
Zfish   614 GSFVQQGGEVPYTTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAKQT-DL 677

  Fly   439 GFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDP--NSVWL-------------SPEEGVIRVRD 488
            .:.||      |.|:....:||  |.....:|||  :.:|.             ..:||:.:|: 
Zfish   678 PYGTV------LDSAVYDQVRS--KGMNPFERDPMYSQMWRMINRTGGAENNVEESKEGIRKVK- 733

  Fly   489 QPGFVYTSEASFMYHFVEKHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLET 552
            ...|.:..:|:.:.:..    :..|...|..:........||| :...|.||.:.:|..:.:.:.
Zfish   734 YGRFAFVWDAAVLEYVA----INDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILELQQN 794

  Fly   553 G---------------------ITSKQSRFFSKTKLHTFSNSFVIQVGMEYAAPLFISLLVAYFL 596
            |                     :.:::|.  |...:|:|             |.:|..|.....|
Zfish   795 GDMDILKLKWWPRDSPCDLYSPVGTRKSG--SALDIHSF-------------AGVFFVLAAGVVL 844

  Fly   597 ALLILILEICWAR 609
            :.||..:|..|.|
Zfish   845 SCLIATVETWWTR 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 49/247 (20%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 37/214 (17%)
ANF_receptor 42..404 CDD:279440 32/184 (17%)
PBP2_iGluR_delta_2 440..806 CDD:270449 79/405 (20%)
Lig_chan 568..841 CDD:278489 57/308 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591204
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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