DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and Grik

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster


Alignment Length:761 Identity:161/761 - (21%)
Similarity:254/761 - (33%) Gaps:212/761 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TSWPL-YRLIVFNL------LEINLSNLMVFHCWSIKEAFPLV-----------EMLNQNGIFSQ 48
            |.|.. .:|...||      |.:.|.:::|...|   |:|.::           |:|...|....
  Fly   123 TRWDFGAQLPTINLHPHPATLGVALRDMVVALGW---ESFTIIYESGEYLPTVRELLQMYGTAGP 184

  Fly    49 YIDVQNPD-----NLANVHKEYLDSD---LVRLGVFLDLG--CDKAELVTNQSSRARLYNQNLHW 103
            .:.|:..:     |..||.:...::|   .|.:|....|.  ..:|:.|...:|..|....||.|
  Fly   185 TVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDW 249

  Fly   104 LL-----YDEAGNFTKLTQL-FEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGGKLNITVD 162
            ..     |..||  |.:|.| ....:.....:|.....|.||.|     .|....|...:.:..|
  Fly   250 HTMDLEPYQHAG--TNITGLRLVSPDSEQVQEVAKALYESEEPF-----QNVSCPLTNSMALVYD 307

  Fly   163 ----------------QTLQCNRSHCQVK-----EYLSELHLRP-----RLQH---RMDLSSVTF 198
                            ..|.||......|     .|:..|.|..     |..:   |.|......
  Fly   308 GVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVI 372

  Fly   199 RLAALVSVL------------------PINSSEEELLEFLN-------------------SDRDS 226
            .||  ||.:                  |.:|.|.::...:|                   |::..
  Fly   373 ELA--VSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLE 435

  Fly   227 HMDSISRIGNRLIMHTQEILGFKLHYIWCGTWSVQD--AFGGA-------IGML---TNESAELC 279
            ..|.....|..||....:.|||..      ||.:|:  .:||.       .|||   .:..|::.
  Fly   436 GNDQFEGFGIELIDELSKKLGFSY------TWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMG 494

  Fly   280 TTPFVPSWNRLHYLHPMTEQAQ--------FRAV---CMFRTPHNAGIKAAVFLEPFMPSVWFAF 333
            .|...           ||.:.:        |.::   .:||.|.....|...|:.||...||...
  Fly   495 ITDLT-----------MTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWL 548

  Fly   334 AGLLIFAGVLLWMIFHLER----HW--MQRCLDFIPSL-----LSSCL-ISFGAACIQGSYLMPK 386
            .  |.:.||.:.| |.|.|    .|  ...|::....|     .::|| .|.||...|||.|.||
  Fly   549 G--LAYMGVSISM-FVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPK 610

  Fly   387 SAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLD---------VGFDT 442
            :...|....:....:.::.:.||:.:.:.|   .|.|.:..|....|.|.:         :|..|
  Fly   611 AYSTRAVAASWWFFTLILVSSYTANLAAFL---TVESLVTPINDADDLSKNKGGVNYGAKIGGAT 672

  Fly   443 VPFTKTYLVSSPRPDIRSLYKQKVESKRD-PNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVE 506
            ..|.|    .|..|..:.:|    |..|| |..:..:.:|||.||.:       |..:|:.....
  Fly   673 FNFFK----ESNYPTYQRMY----EFMRDNPQYMTNTNQEGVDRVEN-------SNYAFLMESTT 722

  Fly   507 KHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETGITSKQSRFFSKTK---- 566
            ..|:......|.::....:...||: :..|..||..|:|..:.|.|.|:.:|.     |||    
  Fly   723 IEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKM-----KTKWWQE 782

  Fly   567 -------LHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEI 605
                   .....:|..:.:.:.....:|:.:.|..|..:.:.:||:
  Fly   783 KRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEM 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 61/247 (25%)
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 57/279 (20%)
ANF_receptor 53..374 CDD:279440 53/260 (20%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 95/412 (23%)
Lig_chan 543..816 CDD:278489 68/298 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462735
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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