DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and KaiR1D

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster


Alignment Length:710 Identity:137/710 - (19%)
Similarity:261/710 - (36%) Gaps:158/710 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSWPL----------YRLI---VFNLLEINLSNLMVFHCWSIKEAFPLVEMLNQNGIFSQY--- 49
            ||.:|:          ||.:   :.|..|.::    |..| |.:....:::...|.|:.|.|   
  Fly   182 MTPFPITVRQLSDSGDYRPLLKQIKNSAEAHI----VLDC-STERIHEVLKQAQQIGMMSDYHSY 241

  Fly    50 ----IDVQ--NPD-------NLANVH--KEYLDSDLVRLGVFLDLG-CDKAELVTNQSSRARLYN 98
                :|:.  |.|       |:....  .|.:.||:||.....:.| ...|.|.|.:|..|.:|:
  Fly   242 LVTSLDLHTVNLDEFRYGGTNITGFRLINEKIVSDVVRQWSIDEKGLLRSANLTTVRSETALMYD 306

  Fly    99 Q-----------------NLHWLLYDEAG---------NFTKLTQLFEGANLSLNADVTYVSRED 137
            .                 ::|.:..|...         |:.|:.::         ..:|.|.:.|
  Fly   307 AVHLFAKALHDLDTSQQIDIHPISCDGQSTWQHGFSLINYMKIVEM---------KGLTNVIKFD 362

  Fly   138 EERF---ILHDVYN---KGSHLGGKLNITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSV 196
            .:.|   .:.|:..   .|....|..|.|:...:...|:..|.::.:           ..:|.:.
  Fly   363 HQGFRTDFMLDIVELTPAGIRKIGTWNSTLPDGINFTRTFSQKQQEI-----------EANLKNK 416

  Fly   197 TFRLAALVSVLPINSSEEELLEFLNSDRDSHMDSISRIGNRLIMHTQEILGF--KLHYIWCGTW- 258
            |..:..::| .|....:|..:..      |..|........||....:.|||  |:..:..|:: 
  Fly   417 TLVVTTILS-NPYCMRKESAIPL------SGNDQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYG 474

  Fly   259 ---SVQDAFGGAIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVCMFRTPHNAGIKAAV 320
               .:...:.|.|..|..:.|:|.......::.|...:...|.........::|.|.........
  Fly   475 SLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKPIKQPPNLFS 539

  Fly   321 FLEPFMPSVWFAFAGLLIFAGVLLWMI---------FHLERHWMQRCLDFIPSLLSSCLISFGAA 376
            ||.|....||...|...:...|||:::         .:.:.|..:....|  :||:....:.|:.
  Fly   540 FLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWPAYTDAHGEKVESQF--TLLNCMWFAIGSL 602

  Fly   377 CIQGSYLMPKSAGGRLA------FIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSS 435
            ..||...:||:...|:.      |..:|::|      ||:.:.:.|....:.|.|.:.:.||..:
  Fly   603 MQQGCDFLPKALSTRMVAGIWWFFTLIMISS------YTANLAAFLTVERMDSPIESAEDLAKQT 661

  Fly   436 -----LDVGFDTVPFTKTYLVSSPRPDIRSLYKQK---VESKRDPNSVWLSPEEGVIRVRDQPG- 491
                 ...|..|..|.:...:|:        |::.   :||.| |:....|..|||.||....| 
  Fly   662 RIKYGALKGGSTAAFFRDSKIST--------YQRMWSFMESAR-PSVFTASNGEGVERVAKGKGS 717

  Fly   492 FVYTSEASFMYHFVEKHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETGIT 555
            :.:..|::.:.:..|::.   |::.:..::   ::..||: ...||.||..:..:.:::.|.|..
  Fly   718 YAFLMESTSIEYVTERNC---ELTQVGGML---DTKSYGIATPPNSPYRTAINSVILKLQEEGKL 776

  Fly   556 S-------KQSRFFSKTKLHTF-SNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICW 607
            .       |:.|...|.::.|. |:|...::|:.....:|:.|:....:|.:|.:.|..|
  Fly   777 HILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFVW 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 52/249 (21%)
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 43/228 (19%)
ANF_receptor 42..378 CDD:279440 39/209 (19%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 78/399 (20%)
Lig_chan 547..823 CDD:278489 62/298 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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