DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and GluRIA

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:667 Identity:125/667 - (18%)
Similarity:244/667 - (36%) Gaps:182/667 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FPLVEMLNQNGIFSQYIDVQNPDNLANVHKEYLDSDLVRLGVFLDLGCDKAELV-TNQSSRARLY 97
            |.|||..|:       |..:.||...:.|.:.....          |...:... ||:||.....
  Fly   337 FVLVEAFNR-------ILRKKPDQFRSNHLQRRSHG----------GSSSSSATGTNESSALLDC 384

  Fly    98 NQNLHWLLYDEAGNFTKLTQLFEGANL-SLNADVTYVSREDEER--FILHDVYNKGSHLGGKLNI 159
            |.:..|:...|.|.  |::::.....: .|:.::.:  .||..|  :.||.|           .:
  Fly   385 NTSKGWVTPWEQGE--KISRVLRKVEIDGLSGEIRF--DEDGRRINYTLHVV-----------EM 434

  Fly   160 TVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAA------------LVSVLPINSS 212
            :|:.|||      ||.|:..:..|.|...|....||   |.|:            :||       
  Fly   435 SVNSTLQ------QVAEWRDDAGLLPLHSHNYASSS---RSASASTGDYDRNHTYIVS------- 483

  Fly   213 EEELLE--FLNSDRDSHMDSISRIGN-RLIMHTQEI-------LGFK--LHYIWCGTWSVQDAFG 265
              .|||  :|:..:.::.:|:  :|| |...:.:::       ||.|  :..:..|.:..::.:.
  Fly   484 --SLLEEPYLSLKQYTYGESL--VGNDRFEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYA 544

  Fly   266 -----GAIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVCMFRTPH-NAGIKAAV---- 320
                 |.:|.|..:.|::.             :..||..|:...|..|..|. ..||...:    
  Fly   545 PGGWDGMVGELIRKEADIA-------------ISAMTITAERERVIDFSKPFMTLGISIMIKKPV 596

  Fly   321 --------FLEPFMPSVWFAFAGLLIFAGVLLWMIFHLER----HWM------------------ 355
                    ||.|....:|.:.  :|.:.|| .::::.:.|    .|.                  
  Fly   597 KQTPGVFSFLNPLSQEIWISV--ILSYVGV-SFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGII 658

  Fly   356 --------QRCLDFIP----SLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYY 408
                    |..:..:|    ::|:|...|..|...||..:.|.|..||:|.......:.::.:.|
  Fly   659 GGATLSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSY 723

  Fly   409 TSIVVSTLLGSPVRSNIRTIQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPN 473
            |:.:.:.|....:.:.|:|.:.|. ...||.:.|:.:..|:          ..:::......  |
  Fly   724 TANLAAFLTVERMVAPIKTPEDLT-MQTDVNYGTLLYGSTW----------EFFRRSQIGLH--N 775

  Fly   474 SVW-----------LSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYL-PREISDLNEIILRPES 526
            .:|           .:.:||:.|||...|     :.:.:....:..|: .|...|..::....::
  Fly   776 KMWEYMNANQHHSVHTYDEGIRRVRQSKG-----KYALLVESPKNEYVNARPPCDTMKVGRNIDT 835

  Fly   527 AVYGM-VHLNSTYRQLLTQLQVRMLETG--ITSKQSRFFSKTKLH-TFSNSFVIQVGMEYAAPLF 587
            ..:|: ..:.|..|:.|.:..:.:.|.|  :..:...:|.||:.: ....|...::.:...|.::
  Fly   836 KGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIY 900

  Fly   588 ISLLVAYFLALLILILE 604
            ..|:....||:::.|:|
  Fly   901 YILIGGLLLAVIVAIME 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 45/271 (17%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375 33/153 (22%)
ANF_receptor 53..434 CDD:279440 26/128 (20%)
PBP2_iGluR_AMPA 477..879 CDD:270433 78/446 (17%)
Lig_chan 612..907 CDD:278489 52/315 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462522
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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